BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB09RM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1227 0.0
3x_Contig1601 119 1e-26
>3x_Contig1741
Length = 21706
Score = 1227 bits (619), Expect = 0.0
Identities = 717/738 (97%), Gaps = 9/738 (1%)
Strand = Plus / Plus
Query: 46 cttcttaatcttagcggtaacttctttgacttgatcatctgtcaagttcaagtttaattg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11328 cttcttaatcttagcggtaacttctttgacttgatcatctgtcaagttcaagtttaattg 11387
Query: 106 atcaacacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11388 atcaacacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatct 11447
Query: 166 cttcataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagccatatatgg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 11448 cttcataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagcca-agatgg 11506
Query: 226 ccttagcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11507 ccttagcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttga 11566
Query: 286 atgggatatttacctccacggcttcagcaatcaagttttcgatatctctgatcttatgca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11567 atgggatatttacctccacggcttcagcaatcaagttttcgatatctctgatcttatgca 11626
Query: 346 atttgtacttagatttggtgtactctggagctgcaacaatcattctagccattagcccac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11627 atttgtacttagatttggtgtactctggagctgcaacaatcattctagccattagcccac 11686
Query: 406 ctagaggagtgataccatttctctcaccgatacctaatacagcgacatcgataagtcttg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11687 ctagaggagtgataccatttctctcaccgatacctaatacagcgacatcgataagtcttg 11746
Query: 466 caccaccttctaatgctgtgtaagcgtttgcaatatcacaaccggtgtcgttgtggaaat 525
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11747 caccaccttctaatgctgtgtaagcgtttgcaatagcacaaccggtgtcgttgtggaaat 11806
Query: 526 ggcattcgatatcacatgataccacactcttcaatgttctgaccaattcgntaacttgtc 585
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 11807 ggcattcgatatcacatgaaaccacactcttcaatgttctgaccaattcgtaaacttgtc 11866
Query: 586 ttggattatcacatccgacggtatcatgcataccaactctgttaacaccaatcttatcga 645
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11867 ttggattagcacatccgacggtatcagcaataccaactctgttaacaccaatcttatcga 11926
Query: 646 cagtcttgtaaatgtttagcaaatcgaccatattcgatctgaaag-atcctcagaaga-a 703
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |
Sbjct: 11927 cagtcttgtaaatgtttagcaaatcgaccaaatccgatctgaaagaatcctcagaagaga 11986
Query: 704 atctgatttc-ataccctggga-ttgacaaattc-atgacttc-atagcagac-tggcaa 758
|||||||||| ||||||| ||| ||||||||||| |||||||| ||||||||| ||||||
Sbjct: 11987 atctgatttcaatacccttggatttgacaaattcaatgacttcaatagcagacttggcaa 12046
Query: 759 tgtaa-tcatgtccttac 775
||||| ||||||||||||
Sbjct: 12047 tgtaattcatgtccttac 12064
>3x_Contig1601
Length = 11162
Score = 119 bits (60), Expect = 1e-26
Identities = 151/180 (83%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 110 acacgtgacttgatagcgttccaaccggtaagcctgttagcgaaatggatgtatctcttc 169
||||| |||||||| ||||||||||| || | ||||| || || || || |||||||||
Sbjct: 5172 acacgagacttgattgcgttccaaccagttaatctgttggcaaagtgaatatatctcttc 5113
Query: 170 ataccgaaatcgtgagggtccaagatttcgtatgtagatgggttagccatatatggcctt 229
||||||||||| | || | | |||||||| |||||||||||||||| | ||||||||
Sbjct: 5112 ataccgaaatcttctggatttagaatttcgtacgtagatgggttagcca-agatggcctt 5054
Query: 230 agcatgaataccagctttatgtgtgaaggcacagaatcctgtaattgggttgttgaatgg 289
|||||||||||||| ||||||||||| ||||||||||| || || |||||||| |||||
Sbjct: 5053 ggcatgaataccagccttatgtgtgaatgcacagaatccagtgatagggttgttaaatgg 4994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5217
Number of Sequences: 1807
Number of extensions: 5217
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)