BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB10FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1734 1178 0.0
>3x_Contig1734
Length = 17938
Score = 1178 bits (594), Expect = 0.0
Identities = 663/684 (96%), Gaps = 2/684 (0%)
Strand = Plus / Plus
Query: 87 tgaaattggccaagacgaagatcgtccgttcttcaactgattataagcacacaggtgcgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14596 tgaaattggccaagacgaagatcgtccgttcttcaactgattataagcacacaggtgcgg 14655
Query: 147 taaatgtgtcacaagagcatttgatgaagtctcaggatgctgaaattttgccaaaggagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14656 taaatgtgtcacaagagcatttgatgaagtctcaggatgctgaaattttgccaaaggagg 14715
Query: 207 gagaacgtaatattttgattacgtctgctttgccatacgtcaacaacgtaccacatttgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14716 gagaacgtaatattttgattacgtctgctttgccatacgtcaacaacgtaccacatttgg 14775
Query: 267 gtaacattgtcggtagtgttttatctgctgatatttattctcgtttcgccaagggtagaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14776 gtaacattgtcggtagtgttttatctgctgatatttattctcgtttcgccaagggtagaa 14835
Query: 327 actacaacgcactatacatctgtggtaccgatgaatacggtacagcaactgagaccaagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14836 actacaacgcactatacatctgtggtaccgatgaatacggtacagcaactgagaccaagg 14895
Query: 387 ctttggaagatggtgtcacacctcgtgaattatgtgacaaataccataaggttcattctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14896 ctttggaagatggtgtcacacctcgtgaattatgtgacaaataccataaggttcattctg 14955
Query: 447 acgtttacaaatggttccaaatcggatttgattatttcggtagaaccactaccgaaaagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14956 acgtttacaaatggttccaaatcggatttgattatttcggtagaaccactaccgaaaagc 15015
Query: 507 aaactgccattgctcaagacattttcatgaagttatatgatagaggctttttggaagagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15016 aaactgccattgctcaagacattttcatgaagttatatgatagaggctttttggaagagc 15075
Query: 567 agatcatgaaacagttgtactgcccagctcacaaaggttacttatctgatagatatgtgc 626
||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 15076 agacaatgaaacagttgtactgcccagctcacaagggttacttagctgatagatatgtgg 15135
Query: 627 aaagtacatgtnncaaatgtggttacgaagacgctcgtggtgatcaatgtgataagtgtg 686
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15136 aaggtacatgtccaaaatgtggttacgaagacgctcgtggtgatcaatgtgataagtgtg 15195
Query: 687 gtgctttgtttgaccccattcaaattga-tgaccccttgtgtaagctagatgaacgtgtt 745
|||||||| |||| ||||||| |||||| |||||| |||||||||||||| |||||
Sbjct: 15196 gtgctttg-ttgaacccattcgaattgattgaccctcgttgtaagctagatgacggtgtt 15254
Query: 746 tctgaaccacgtgatttcgaccat 769
||||||||||||||| |||||||
Sbjct: 15255 cctgaaccacgtgattccgaccat 15278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5767
Number of Sequences: 1807
Number of extensions: 5767
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)