BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB10RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1727 1277 0.0
>3x_Contig1727
Length = 17872
Score = 1277 bits (644), Expect = 0.0
Identities = 798/840 (95%), Gaps = 7/840 (0%)
Strand = Plus / Plus
Query: 43 gctttcatgatcgttactgctactggtgactccactttcgtcggtagagctgctgctttg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16016 gctttcatgatcgttactgctactggtgactccactttcgtcggtagagctgctgctttg 16075
Query: 103 gttaacaaggctgctgctggtagtggtcatttcactgaagttttgaacggtattggtacg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16076 gttaacaaggctgctgctggtagtggtcatttcactgaagttttgaacggtattggtacg 16135
Query: 163 atcttgttgatcttggttattgttaccttgttgctcgtttgggttgcctccttctacaga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16136 atcttgttgatcttggttattgttaccttgttgctcgtttgggttgcctccttctacaga 16195
Query: 223 actaacaagattgttagaattttgagatacactttggctatcaccattgtcggtgtccca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16196 actaacaagattgttagaattttgagatacactttggctatcaccattgtcggtgtccca 16255
Query: 283 gtcggtttgccagctgtcgttaccaccaccatggctgtcggtgctgcttacttggctaat 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16256 gtcggtttgccagctgtcgttaccaccaccatggctgtcggtgctgcttacttggctaag 16315
Query: 343 aaacaagccattgtccaaaaattgtctgccattgaatctttggctggtgtcgaaatcttg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16316 aaacaagccattgtccaaaaattgtctgccattgaatctttggctggtgtcgaaatcttg 16375
Query: 403 tgttctgacaagaccggtactttgaccaagaacaagttgtccttacatgaaccttacact 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16376 tgttctgacaagaccggtactttgaccaagaacaagttgtccttacatgaaccttacact 16435
Query: 463 gttgaaggtgttgacccagatgacttgatgttgactgcttgtttggctgcttctagaaag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16436 gttgaaggtgttgacccagatgacttgatgttgactgcttgtttggctgcttctagaaag 16495
Query: 523 aagaatggtttggatg-cattgacaagggcttcttgaaatctttgatctcttacccaata 581
||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 16496 aagaagggtttggatgccattgacaaggctttcttgaaatctttgatctcttacccaaga 16555
Query: 582 gccaaagctgctttgactaagtacaagttgtttggattccacccattcgaccctgttttc 641
||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct: 16556 gccaaggctgctttgactaagtacaagttgttggaattccacccattcgaccctgtttcc 16615
Query: 642 aagaaagttaccgctattgtcaaatct-caggaagtgaaagaatcatttgtgttaagggt 700
||||| ||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||
Sbjct: 16616 aagaaggttaccgctattgtcgaatctccagaaggtgaaagaatcatttgtgttaagggt 16675
Query: 701 gcttcattgttcgttttgaaaactggtgaa-aagaacatccaattcca-aagattttccg 758
||| |||||||||| ||||| |||| |||| ||||||||||||||||| ||||| | |
Sbjct: 16676 gctccattgttcgtcttgaagactgttgaagaagaacatccaattccagaagatgtccgt 16735
Query: 759 gaaaactacgaaaac-aggttgctgaattggcctcccagaggttt-aaaaccttgggtgt 816
||||||||||||||| ||||||||||||||| || |||||||||| | | ||||||||||
Sbjct: 16736 gaaaactacgaaaacaaggttgctgaattgg-cttccagaggtttcagagccttgggtgt 16794
Query: 817 ttccccaaaaaaaagtgaaggtccctgggaaattttgggggttttgccatggttggatcc 876
| || ||| | | ||||||||| ||||||||||||||| ||| ||||||| |||||||
Sbjct: 16795 tgccagaaagagaggtgaaggtcactgggaaattttgggtgttatgccatgtatggatcc 16854
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7504
Number of Sequences: 1807
Number of extensions: 7504
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)