BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB11FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig146 1479 0.0
>3x_Contig146
Length = 1181
Score = 1479 bits (746), Expect = 0.0
Identities = 821/841 (97%), Gaps = 4/841 (0%)
Strand = Plus / Minus
Query: 85 ttgaatgaattgagatggaaaaactacgaagaatctggatccatcagcagtgaaggttcc 144
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1025 ttgaatgaattgagatggaaaaattacgaagaatctggatccatcagcagtgaaggtccc 966
Query: 145 atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 906
Query: 205 gtaaaacaaggttgtgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 264
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gtaaaacaaggttgcgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 846
Query: 265 gctgatcaatggtatagtaggtc-tgcatatgatatttctcgactcatctcagatacgtt 323
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 845 gctgatcaatggtatagtaggtcctgcatatgatatttctcgactcatctcagatacgtt 786
Query: 324 aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 726
Query: 384 agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 666
Query: 444 gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 606
Query: 504 acacagactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acacagactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 546
Query: 564 caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 486
Query: 624 tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgcaacaacaac 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgcaacaacaac 426
Query: 684 gactacagcaactgctgctactggatatgtgatctcgatgagaagctgtgtttgttt-aa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 425 gactacagcaactgctgctactggatatgtgatctcgatgagaagctgtgtttgtttaaa 366
Query: 743 caacatggcatcgatattgaacatgattgatgaagtagagaaaagttttcaattaaacca 802
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 365 caacatggcatcgatattgaacatgattgatgaagtagagaaaagtttccaattaaacca 306
Query: 803 attgagtgaaagagtacgtgctcacgtgaccgacgancac-attagtaaatcaaatcgga 861
|||||||||| |||||||||||||||||||||||| || || || |||||||||||||
Sbjct: 305 attgagtgaagaagtacgtgctcacgtgaccgacgacaacaataagaaaatcaaatcgga 246
Query: 862 gattaagggccaa-tgtgggtcatatttccgatagccgccgaaagtgcttcttgcgtcgg 920
||||||||||||| ||||| ||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 245 gattaagggccaattgtggtcaatagttccgatagccgccgaaggtgctccttgcgtcgg 186
Query: 921 c 921
|
Sbjct: 185 c 185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6568
Number of Sequences: 1807
Number of extensions: 6568
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)