BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1241 1516 0.0
>3x_Contig1241
Length = 5349
Score = 1516 bits (765), Expect = 0.0
Identities = 836/855 (97%), Gaps = 4/855 (0%)
Strand = Plus / Minus
Query: 42 gcttgaccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatc 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2409 gcttgaccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatc 2350
Query: 102 caaatgggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2349 caaatgggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttag 2290
Query: 162 cattttcttgccactcattggtgagactttgaaccagtaccagaatgtaatttttatgga 221
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 2289 cattttcttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatgga 2230
Query: 222 ctcccttatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagac 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2229 ctcccttatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagac 2170
Query: 282 atgatgttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtgga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2169 atgatgttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtgga 2110
Query: 342 agaatatagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109 agaatatagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatag 2050
Query: 402 tcgtgaatggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgatt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2049 tcgtgaatggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgatt 1990
Query: 462 ggcgattttcttggtatttgacatcaatttggcaaggcatgaccaaaggttttcgataat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1989 ggcgattttcttggtatttgacatcaatttggcaaggcatgaccaaaggttttcgataat 1930
Query: 522 tgagatatccaacatggaattgaaaacacagcaaaggtctttcaccaagctgcaaccgtg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1929 tgagatatccaacatggaattgaaaacacagcaaaggtctttcaccaagctgcaaccgtg 1870
Query: 582 ggtacaaagagaagttcttaacgaaagggccgatttagtgacgcagtattgtaaatttag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1869 ggtacaaagagaagttcttaacgaaagggccgatttagtgacgcagtattgtaaatttag 1810
Query: 642 atctttccatagntctaaaaatttgtccgggaatttcatggaaacgtttnctaagacaat 701
|||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 1809 atctttccatagttctaaaaatttgtccgggaattcaatggaaacgtttcctaagacaat 1750
Query: 702 ggatcgaagtttggtaacatttgtctggctaattttccaattctggtctgtttcccttga 761
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1749 ggatcgaagtttggtaacatttgtctgtctaattttccaattctgttctgtttcccttga 1690
Query: 762 aacttcaaacgctggtagcattgactccaaatctgttat-agattactcaagttgctgta 820
| |||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||
Sbjct: 1689 accttcaaacgctggtagcattgactccaaatcttttataagataactcaagttgctgta 1630
Query: 821 tgaaattggctcttgggcagggtacggtgggaaattgcggcgcctgatgcattattggat 880
||| ||||||||| ||||| ||||| ||||||||||||||||||||||||| || |||||
Sbjct: 1629 tgagattggctctggggca-ggtaccgtgggaaattgcggcgcctgatgca-taatggat 1572
Query: 881 tgtaatatcattttg 895
|||||| ||||||||
Sbjct: 1571 tgtaat-tcattttg 1558
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6527
Number of Sequences: 1807
Number of extensions: 6527
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)