BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB12FM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1229 0.0
>3x_Contig1294
Length = 6938
Score = 1229 bits (620), Expect = 0.0
Identities = 761/795 (95%), Gaps = 10/795 (1%)
Strand = Plus / Plus
Query: 84 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4333 tataagcaggggatcatattgagaacgtccgagtcatacatgatggttgttccttttttg 4392
Query: 144 tccctttactcaagatctttgatcactcgaaata-tcgggcagggccctttattcgcaag 202
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4393 tccctttactcaagatctttgatcactcgaaataatcgggcagggccctttattcgcaag 4452
Query: 203 aacaacttttattttattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 262
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4453 aacaacttttagattattacaacaagaatagaaaaccggtactgtcgaatgtcaattaga 4512
Query: 263 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4513 taacgtctatatatttgcattcatatctgtaatcttataaccacttctggtattcatatc 4572
Query: 323 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4573 aacgtcctcttctacgggatatctcttttcatctaactgtgcttatgttcaccttttcta 4632
Query: 383 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4633 ttataatggaaaatgatatctaagaacatattaagtgcgaatctccagttagaaagatcg 4692
Query: 443 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4693 attaagacggaggataagacaaccaaatagggaattagaggtgaacggatgctatatttc 4752
Query: 503 ggatgcaaggagtgatggatgatataaatgtggcaaaacacataatattttgtcaaagac 562
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 4753 ggatgcaaggagtgatggatgataaaaatgtggcaaaacacataaaattttgtcaaagac 4812
Query: 563 atttgncattgttgccgtctcatcgcctggatatagatccccata-gttagccattgcgt 621
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 4813 atttgcaattgttgccgtctcatcgcctggatatagatcccaataggttagccattgcgt 4872
Query: 622 tctattcgttgacagcgattgatctattgggc-atccagtgcgcaaggacttcc-ataca 679
|||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||
Sbjct: 4873 tctattcgttgacagcgattgagctattgggcaagccagtgcgcaaggacttccaataca 4932
Query: 680 gtttggattggattagatcgtgctatattg-acttgctgattactctggctttgccatcc 738
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4933 gtttggattggattagatcgtgctatattgaacttgctgattactctggctttgccatcc 4992
Query: 739 cgtcttttaaacacgct-agc-attgactactttaaatttacc-aattcattatttggac 795
||||||||| ||||||| ||| |||||||||| |||||||||| ||| ||||||||||||
Sbjct: 4993 cgtcttttagacacgctaagcaattgactactataaatttaccaaatacattatttggac 5052
Query: 796 taa-atgttcttatgtggtggggggattccgaatcctttgttgaaaattggaaccgggat 854
||| ||| |||||||| || ||||||| ||||| ||||| ||| || | |||||| |||
Sbjct: 5053 taatatg-tcttatgttgttgggggatcacgaattctttgatgagaagttgaaccgtgat 5111
Query: 855 tccttgggcaaattc 869
| ||||||||||||
Sbjct: 5112 acgttgggcaaattc 5126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6097
Number of Sequences: 1807
Number of extensions: 6097
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)