BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZB12RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig537 1352 0.0
>3x_Contig537
Length = 3151
Score = 1352 bits (682), Expect = 0.0
Identities = 810/845 (95%), Gaps = 6/845 (0%)
Strand = Plus / Plus
Query: 48 caccgtggtaagttcctttccgagggaagtcgaaataagtgctgaaaaaacgataattgg 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 caccgtggtaagttccttcccgagggaagtcgaaataagtgctgaaaaaacgataattgg 1735
Query: 108 gatgtaagcgaatgtaaacatggtgtaaagtttgaacaaaaggagcgttgaggttcatat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1736 gatgtaagcgaatgtaaacatggtgtaaagtttgaacaaaaggagcgttgaggttcagat 1795
Query: 168 tttactatctacgcctgttgtgttttttcggaatgctcagtttgatggtttacacaacca 227
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 tttactagctacgcctgttgtgttttttcggaatgctcagtttgatggtttacacaacca 1855
Query: 228 acaatttaagatgtgtaaaggtccttaattcagatgtgtcaagttagttccgaattctac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 acaatttaagatgtgtaaaggtccttaattcagatgtgtcaagttagttccgaattctac 1915
Query: 288 cagcaatttatacgaattccatcttgatttctgataggcaatgacatatagttaagttgt 347
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1916 cagcaatttatacgaattccatcttgatttctgataggcaatgacatatatttaagttgt 1975
Query: 348 gtcatagtttcaagttcaaacctaaaatacgcattgaacacgttacccatgtgttgggga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1976 gtcatagtttcaagttcaaacctaaaatacgcattgaacacgttacccatgtgttgggga 2035
Query: 408 ttaacgaattgcatgcaagattactatacaagtattcaaactcctgagaaccagtgcatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2036 ttaacgaattgcatgcaagattactatacaagtattcaaactcctgagaaccagtgcatg 2095
Query: 468 ataaacctcattaacagacagacgtgatgtattttttatccaatataagatttcaatgtc 527
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2096 aaaaacctcattaacagacagacgtgatgtattttttagccaatataagatttcaatgtc 2155
Query: 528 gtttcataaaacaaggttagaccctattctaccttctatagatcttcgctggctatcgaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2156 gtttcataaaacaaggttagaccctattctaccttctatagatcttcgctggctatcgaa 2215
Query: 588 ccaaacatcaatcaaccagacatatttcgtttcgaagattgtagcaatgcgaagaatacc 647
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2216 ccaaacatcaatcaaccagacatatttcgtttcgaagaatgtagcaatgcgaagaatacc 2275
Query: 648 tgtcccacaatattgccgnagtccctctattaaacttatttaac-agacgtccctaccct 706
|| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |
Sbjct: 2276 tggcccacaatattgccgtagtccctctattaaacttaattaacaagacgtccctacctt 2335
Query: 707 ttgaatgatggactctcatttagagatataatgtttgtcctataccgcatttttccttaa 766
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| |
Sbjct: 2336 ttgaatgatggactctcatttagagatattatgtttgtcctatagcgcagtttcccttta 2395
Query: 767 cagcttataatgtagatgaagtttttattttaattaaccctttccttgactaatttggna 826
| ||||||||||||||||||||||| ||||||| || |||||| |||||||| | || |
Sbjct: 2396 cggcttataatgtagatgaagttttaattttaa-tagacctttcattgactaaatagg-a 2453
Query: 827 aaaacctc-agtattcgaatttcatttcaaaaacgcccgtttttgggatcaatgggaaca 885
|| || || |||| ||||| |||| |||||||||||||| | |||||||||||||||||
Sbjct: 2454 aagacgtcaagta-tcgaaattcagttcaaaaacgcccg-atatgggatcaatgggaaca 2511
Query: 886 tttga 890
|||||
Sbjct: 2512 tttga 2516
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5991
Number of Sequences: 1807
Number of extensions: 5991
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)