BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC01FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1358 0.0
>3x_Contig1728
Length = 20685
Score = 1358 bits (685), Expect = 0.0
Identities = 741/752 (98%), Gaps = 7/752 (0%)
Strand = Plus / Minus
Query: 86 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13568 ctttcttcaacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttg 13509
Query: 146 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13508 cggagatactactaacgtcagatgataaagggaccattctcgagctgcttttgaatgcct 13449
Query: 206 tatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13448 tatacgacttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctct 13389
Query: 266 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13388 gtggtgtagaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcagga 13329
Query: 326 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13328 tgctgttcctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttact 13269
Query: 386 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13268 tgaaatatatgctattttccaacttatctgctcctgaatttcttcaaacattagccatgc 13209
Query: 446 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13208 atgtcaagagtgataacggctatgaatacatatccagaacaataggcagtttccgtgact 13149
Query: 506 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13148 tttgtattgtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgt 13089
Query: 566 accaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13088 accaagtacttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttt 13029
Query: 626 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatattattgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 13028 tgattgagatcgtcaaagcagattgtaactattccgatttatcagaagaatatta-tgct 12970
Query: 686 ttcttaactgagttagtgacaatggaaagtaataactacaaagaagctaaagtcattttg 745
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 12969 ttcttaactgagttagtgacaatggaaagtaataactacaaggaagctaaagtcattttg 12910
Query: 746 gacctaccacagttttacgccagctgtctacggtggccattaattcctctgccaaatttt 805
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct: 12909 gacctaccacag-tttacgccagctgtctacggt-gccattaa-tcctctgcc-aatttt 12854
Query: 806 taaaagcttgtttcttccaagtttttacctga 837
||| |||||||| ||| |||||||||||||
Sbjct: 12853 taagagcttgtt--ctccgagtttttacctga 12824
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7304
Number of Sequences: 1807
Number of extensions: 7304
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)