BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZC01RM1.SCF screened BAC_end
         (930 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1175                                                         293   3e-79

>3x_Contig1175 
          Length = 4107

 Score =  293 bits (148), Expect = 3e-79
 Identities = 181/188 (96%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 598 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 60

                                                                       
Query: 658 tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtggacttatcaaa 717
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61  tatgggacgttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaaa 120

                                                                       
Query: 718 agaaagactttttttgtggcggtatcggcttggtatgaaccgggagaatttctttttctt 777
           ||| |||||||||||| |||||||||||| ||||||||||||| |||| |||| ||||||
Sbjct: 121 agatagactttttttg-ggcggtatcggc-tggtatgaaccggcagaa-ttctctttctt 177

                   
Query: 778 agtcttaa 785
           ||||||||
Sbjct: 178 agtcttaa 185


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,627
Number of Sequences: 1807
Number of extensions: 12627
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)