BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC02RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1211 0.0
>3x_Contig1728
Length = 20685
Score = 1211 bits (611), Expect = 0.0
Identities = 681/697 (97%), Gaps = 7/697 (1%)
Strand = Plus / Minus
Query: 55 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560 aacgttgctgacgaacattgtgaatatggagaaagtgttgcaaattttgttgcggagata 13501
Query: 115 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13500 ctactaacgtcagatgataaagggaccattctcgagctgcttttgaatgccttatacgac 13441
Query: 175 ttcaggaacatgtttgacgcaggaaggatttacattgcttattgagttctctgtggtgta 234
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13440 ttcaggaacatgtttgacgcaggaaggatttacattgcttatggagttctctgtggtgta 13381
Query: 235 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13380 gaaaaattgaaagaaagagtttttgaaactagacacattgaaataatcaggatgctgttc 13321
Query: 295 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13320 ctgtgccggtgtgaagagaatatcttacaaactactattcaaagcatttacttgaaatat 13261
Query: 355 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13260 atgctattttccaacttatctgctcctgaatttcttcaaacattagccatgcatgtcaag 13201
Query: 415 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13200 agtgataacggctatgaatacatatccagaacaataggcagtttccgtgacttttgtatt 13141
Query: 475 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 gtcaactataatcaatctttagaaggatatgaagttccacaagacgcattgtaccaagta 13081
Query: 535 cttgcctatgaattatttgattgtgagccttatgnaatctcggatcaa-ttttgattgag 593
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 13080 cttgcctatgaattatttgattgtgagccttatgaaatctcggatcaatttttgattgag 13021
Query: 594 atcgtc-aagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 652
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13020 atcgtcaaagcagattgtaactattccgatttatcagaagaatattatgctttcttaact 12961
Query: 653 gagttagtgacaatggaaaagtatatcttcaagggaagctaaagtcattttgggacccta 712
||||||||||||||||||| ||| || ||| |||||||||||||||||||| ||||
Sbjct: 12960 gagttagtgacaatggaaagtaataactacaa-ggaagctaaagtcattttgg--accta 12904
Query: 713 ccacagtttacgcccagctgtgttacggtgccattaa 749
|||||||||||| |||||||| ||||||||||||||
Sbjct: 12903 ccacagtttacg-ccagctgt-ctacggtgccattaa 12869
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7165
Number of Sequences: 1807
Number of extensions: 7165
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)