BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC03FM1.SCF screened BAC_end
(876 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1445 0.0
>3x_Contig1610
Length = 13981
Score = 1445 bits (729), Expect = 0.0
Identities = 779/795 (97%), Gaps = 1/795 (0%)
Strand = Plus / Minus
Query: 83 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 ctcttgattttgtgcattaggtatttatatgttttttctcactgaaaacaacttcctcca 2390
Query: 143 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 gtttttgcttacatggcacgaaacttttcataatgaacggcattagtattcaggtaagat 2330
Query: 203 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 ctaacagctgatgcgttttttgctccaacagcaaacagaaaggacctagaagcgtctatt 2270
Query: 263 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 taactcgactagctttcttatcaaactgtcttcatttattgtcaaacccaaatgatttat 2210
Query: 323 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tttgggcagattgaaacttcattggtcaaaacagctatagagcattgagtgaaacctcta 2150
Query: 383 ctcgtaccttcgatgagccagttgggtttcaatatctagtcacgtgtgtttacttaaact 442
|||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2149 ctcgaaacatcgatgagccagttgggtttcaatatctagtcacgtgtgtgtacttaaact 2090
Query: 443 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctcttcgcttttttgtctatgtccactaccctgatttcggatttggctggtgctttcctt 2030
Query: 503 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 tttttctctgaaaccagaattacatattttaaaatcaatacaaatttaaatcaccactga 1970
Query: 563 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 ggccgttgataacaaccttgatccaaactgatctctgttcctttatcatcaaaatattcg 1910
Query: 623 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 gatacgttcgtagaataacttaatttcgataaaaaggagtgtgtgacactagttgaaact 1850
Query: 683 ctctttttttttttacgcatttgttattgactgagctnttcattatttcatcttttgagt 742
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1849 ctctttttttttttacgcatttgttattgactgagcttttcattatttcatcttttgagt 1790
Query: 743 actggttaagaaagtaccacgcagctgaaagcataatataaacgatgtcacagtttgaac 802
|||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||
Sbjct: 1789 actggttaagaaggtaccacgcagctgaaggcaaaatataaacgatgtcacagttgaaac 1730
Query: 803 cttttccatcttatgnacaagat-acagtaatgggcgtgcgtctggtattgaacctgtca 861
|||| |||||||||| ||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1729 ctttcccatcttatggacaagataacagtaatggcggtgcgtctggtattgaacctgtca 1670
Query: 862 aggatcacaaaagaa 876
||||||||| |||||
Sbjct: 1669 aggatcacagaagaa 1655
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,894
Number of Sequences: 1807
Number of extensions: 11894
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 876
length of database: 10,358,551
effective HSP length: 16
effective length of query: 860
effective length of database: 10,329,639
effective search space: 8883489540
effective search space used: 8883489540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)