BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC03RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1085 1477 0.0
>3x_Contig1085
Length = 5008
Score = 1477 bits (745), Expect = 0.0
Identities = 812/828 (98%), Gaps = 5/828 (0%)
Strand = Plus / Minus
Query: 48 ccaaaacctttaaataaatccaaggtccacgcacgagagaaggtagtggcgacgaaattg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 ccaaaacctttaaataaatccaaggtccacgcacgagagaaggtagtggcgacgaaattg 2892
Query: 108 cagtccgacaacacaccaagcaaaaaaagctttcaacaaacagtgagcaaaaccaacgct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 cagtccgacaacacaccaagcaaaaaaagctttcaacaaacagtgagcaaaaccaacgct 2832
Query: 168 gaagtccaacgcattgcatctactattgttaacgaaaaggaagctatatcagataatgaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 gaagtccaacgcattgcatctactattgttaacgaaaaggaagctatatcagataatgaa 2772
Query: 228 tcggatttatctgaatatcacgaaagtaaagaagagtttgcaaacgcatcctcttcggac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 tcggatttatctgaatatcacgaaagtaaagaagagtttgcaaacgcatcctcttcggac 2712
Query: 288 agtgatgaagagtttgaagattaccagtctgcagaagagcttgcaattgtagaacctgcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 agtgatgaagagtttgaagattaccagtctgcagaagagcttgcaattgtagaacctgcc 2652
Query: 348 aagaaaaaggtgagatctattaaaccagatatacccatttcaccagtaaaatcacagact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 aagaaaaaggtgagatctattaaaccagatatacccatttcaccagtaaaatcacagact 2592
Query: 408 ccattgcagccatcagcagttcattcatctcctagaaagttctttaagaataatatagtg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2591 ccattgcagccatcagcagttcattcatctcctagaaagttctttaagaataatatagtg 2532
Query: 468 cgcgctaaaaaggcatatactccattttccaaacggtataagaatccgaaggatattcct 527
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2531 cgcgctaaaaaggcatatactccattttccaaacggtataagaatccgaa-gatattcct 2473
Query: 528 gacttgaacgatattttccaaaggcataataatgatttggatatagctgcattagaggag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2472 gacttgaacgatattttccaaaggcataataatgatttggatatagctgcattagaggag 2413
Query: 588 agattcagaacagtttctgctaaaggcaaaatggagactattntttctaaggtgaagaaa 647
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2412 agattcagaacagtttctgctaaaggcaaaatggagactattttttctaaggtgaagaag 2353
Query: 648 gcattgaactcaaagaatagcaaagaagaaattgtcaaagctgctgatttcgacaattat 707
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2352 caattgaactcaaggaatagcaaagaagaaattgtcaaagctgctgatttcgacaattat 2293
Query: 708 cttccggcaagaagaaaatgaatttgc-agtatatacctctcacttttacagtgcattga 766
||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct: 2292 cttccggcaag-agaaaatgaatttgcaagtatatacctctcac-tttacagtgcaattg 2235
Query: 767 aagca-gcactagcaccagtatttacattgccgggacgccaggcgtttgtaaaactttga 825
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2234 aagcaggcactagcaccagtatttacattgccgggacgccaggcgttggtaaaactttga 2175
Query: 826 cggttcgagaagtagttaaagatttaatgacatctgcagaccaaaaag 873
|||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 2174 cggttcgagaggtagttaaggatttaatgacatctgcagaccaaaaag 2127
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7138
Number of Sequences: 1807
Number of extensions: 7138
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)