BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC04FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig928 1219 0.0
>3x_Contig928
Length = 1948
Score = 1219 bits (615), Expect = 0.0
Identities = 737/762 (96%), Gaps = 12/762 (1%)
Strand = Plus / Plus
Query: 139 atatatgtaggccggaacagattgttcttcgcaaatgtaaactaacttatgtgttaatgt 198
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1 atatatgt-ggccggaacagattgttct-cgcaaatgtaa-ctaacttatgtgtta-tgt 56
Query: 199 acaaatatgaatatatttcaaatttaaatcttaataatattagttatgcttatgtccagt 258
||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct: 57 acaaatagga-tatatttcaaagt-aaatctgaataatattagttatgcttatgtccagt 114
Query: 259 ttggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 318
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 t-ggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 173
Query: 319 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 233
Query: 379 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 293
Query: 439 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 353
Query: 499 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 413
Query: 559 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 473
Query: 619 ctgtttgtaacagatcccaagccttttgataagaaccttccatcanaagtctttccaact 678
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 474 ctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaact 533
Query: 679 ttactggataa-agagagtacgaactctcttccaaattcgtaacgtatctgctcaaaaac 737
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttactggataagagag-gtacgaactctcttccaaattcgtaacgtatctgctcaaaaac 592
Query: 738 tcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaagattaattagtccaaa 797
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 593 tcaaattctgagtgaagtttagtgtaatcgttttgtgctagcaagattaataagtacaaa 652
Query: 798 c-tatcaaactgaacttgctatctg-atcactcaattcttttacatcagaaaa-taggat 854
| |||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||| ||
Sbjct: 653 cttatcaacttgaacttgctatctgaatcactcaattctttcacatcagaaaagtagaat 712
Query: 855 gcgcttaactgtgagttatagtccatgaaagattcaaaatcc 896
|||||||||||||||| ||||| |||||||| ||||||||||
Sbjct: 713 gcgcttaactgtgagtaatagttcatgaaagtttcaaaatcc 754
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6747
Number of Sequences: 1807
Number of extensions: 6747
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)