BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1260 1241 0.0
>3x_Contig1260
Length = 5981
Score = 1241 bits (626), Expect = 0.0
Identities = 675/686 (98%), Gaps = 4/686 (0%)
Strand = Plus / Minus
Query: 47 ttggaacagccaaggatggtgcccaagtgaaatcagccggttcatgagcagcttcacccc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 ttggaacagccaaggatggtgcccaagtgaaatcagccggttcatgagcagcttcacccc 4943
Query: 107 aacccttgatcaaagccaatggtttcaagtttagttccttcaatttcttttcagaaacca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 aacccttgatcaaagccaatggtttcaagtttagttccttcaatttcttttcagaaacca 4883
Query: 167 agatcacggcagcaccaccatcgttaattggagaagcgtttggtgctgtgacagtacctt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4882 agatcacggcagcaccaccatcgttaattggagaagcgtttggtgctgtgacagtacctt 4823
Query: 227 taccatttgcggcaaacacagctctagcagatctcaatttttcaacgttcaacttacttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4822 taccatttgcggcaaacacagctctagcagatctcaatttttcaacgttcaacttacttg 4763
Query: 287 gttcttcatctttcgtcacctgggtatccggtttccctctgaaacctttgatagtgatag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4762 gttcttcatctttcgtcacctgggtatccggtttccctctgaaacctttgatagtgatag 4703
Query: 347 gaacgatctccttgtcgaacttaccttgagattgagccaattgggccttttggtaagatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4702 gaacgatctccttgtcgaacttaccttgagattgagccaattgggccttttggtaagatt 4643
Query: 407 gaatggcaaaatcgtcttgttcttctctgctgaaatcgtagtcactggcacatttctcag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4642 gaatggcaaaatcgtcttgttcttctctgctgaaatcgtagtcactggcacatttctcag 4583
Query: 467 catgaacacccatggcctgaccgtcgtaagcatcgttcaaaccatctctttgaataccat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 catgaacacccatggcctgaccgtcgtaagcatcgttcaaaccatctctttgaataccat 4523
Query: 527 caatgacttttgctttcaccaaatctagcaccactacggtgagacgacaagtagtatggg 586
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4522 caatgac-tttgctttcaccaaatctagcaccactacggtgagacgacaagtagtat-gg 4465
Query: 587 ggcattggacattgattcagcaccaccagccacaatattatcggcagatccggtctttat 646
|||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||
Sbjct: 4464 ggcattggacattgattcagcaccaccagcaacaataatatcggcagaaccggtcttaat 4405
Query: 647 gggctgagcaccccagatgatacctttcataccagaa-cacaaaccttgttaacagtact 705
|| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 4404 ggcctgagcacccaagatgatagctttcataccagaagcacaaaccttgttaacagtact 4345
Query: 706 ggcgacaattgtgttttcccaaccca 731
|||||||| |||||||||||||||||
Sbjct: 4344 ggcgacaa-tgtgttttcccaaccca 4320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7402
Number of Sequences: 1807
Number of extensions: 7402
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)