BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC05FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1419 0.0
>3x_Contig1771
Length = 25932
Score = 1419 bits (716), Expect = 0.0
Identities = 768/780 (98%), Gaps = 4/780 (0%)
Strand = Plus / Plus
Query: 88 gcttcgttcttattcaagatacgtttcaaagctttagcgtcgtatttacaacagaaaaca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14485 gcttcgttcttattcaagatacgtttcaaagctttagcgtcgtatttacaacagaaaaca 14544
Query: 148 tggcctgtagcgatagcgcaaactacaattggctgctcaggatggcatgcaacgtgaatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14545 tggcctgtagcgatagcgcaaactacaattggctgctcaggatggcatgcaacgtgaatt 14604
Query: 208 aacggctcatcgaatacaaactccaatattggagaacttttggaggccaacacctccaaa 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14605 aacggctcatcgaatacaaactccaatattggagaacttttggaggccaacacctccaaa 14664
Query: 268 gaagcagcgcgcttctttgccttcgtatttttacccatttaatatgactcacctagtgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14665 gaagcagcgcgcttctttgccttcgtatttttacccatttaatatgactcacctagtgat 14724
Query: 328 atactgtattgagcaatagtaatcactaggttttcaggctaaagaaatgatataattcgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14725 atactgtattgagcaatagtaatcactaggttttcaggctaaagaaatgatataattcgt 14784
Query: 388 tccactccaacagtaagtcgctctcatcgctcaagtaaactctgttgtaattttttttga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14785 tccactccaacagtaagtcgctctcatcgctcaagtaaactctgttgtaattttttttga 14844
Query: 448 ttttctttctattggatgaaaataaaaaccagaaatacatatttaaggtttgtcaacaat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14845 ttttctttctattggatgaaaataaaaaccagaaatacatatttaaggtttgtcaacaat 14904
Query: 508 ggaaggcgagatgggatctgtgcgttgaggagatgttctggcgataatagattccacatg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14905 ggaaggcgagatgggatctgtgcgttgaggagatgttctggcgataatagattccacatg 14964
Query: 568 cggttgtaattctggcaattcgtcgatgatcttttcagctaacgaatcgcggagcttgtt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14965 cggttgtaattctggcaattcgtcgatgatcttttcagctaacgaatcgcggagcttgtt 15024
Query: 628 gaggccgtgtatctttgcgcgttggtactggttggaccgacggatcgcctctacaaactc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15025 gaggccgtgtatctttgcgcgttggtactggttggaccgacggatcgcctctacaaactc 15084
Query: 688 tcttgtgtacacatcggggtttccttccgtcttctatatactgtaaaacgtccaatggta 747
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 15085 tcttgtgtacacatcgggg-ttccttccgtcttctatatactgtaaaacgtccaatggta 15143
Query: 748 ctaggaaattctgtagttgtgactcgggaatcg-tagcttgttgattcaattg-ttcata 805
|||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||
Sbjct: 15144 ctaggaaattctgtagttgtgactcggg-atcgttagcttgttgattcaattgtttcata 15202
Query: 806 cggtcaacattaccttgcatgttggtaacataaccttgctttgaatttttaattcctggg 865
||||||||||||| ||||||||||||||| ||||||| |||||| || | ||||||||
Sbjct: 15203 cggtcaacattacgttgcatgttggtaaccataccttgcattgaatcttcagttcctggg 15262
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6361
Number of Sequences: 1807
Number of extensions: 6361
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)