BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1304 0.0
>3x_Contig1565
Length = 10922
Score = 1304 bits (658), Expect = 0.0
Identities = 721/738 (97%), Gaps = 3/738 (0%)
Strand = Plus / Plus
Query: 49 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6116 ctgtccattaaatctactggaataaaacgctcagtttcagttggaaagaaaaaaaaaaga 6175
Query: 109 catattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgagaggga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6176 catattccgaccaatgagagcggttcagataattttgaagaagcgtaatattgagaggga 6235
Query: 169 caacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaattgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6236 caacaaactttttaccaacccatttcttgttgtgatctttccttacctaaaggaaattgc 6295
Query: 229 aaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtatttg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6296 aaaaagaaaaaaaagaaccgtcttcgaattccattccggccgatgagcaagtggtatttg 6355
Query: 289 ggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttataagcagc 348
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6356 ggaggtaacgtatcgactagtagtttatgcggttttcctactcaatcctttagaagcagc 6415
Query: 349 gctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagttg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6416 gctagaaggcaaggaagcagaagacattttgtctaccttttcacagattccaaacagttg 6475
Query: 409 atattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatagc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6476 atattttgggaaggactttccgtaaacattctgaaatctcgcattagatccgtagatagc 6535
Query: 469 gtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatccgatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6536 gtcgtagcccaccgtgaacaagccaaaaaagtgcacgcaaaaactacatgtaatccgatg 6595
Query: 529 gtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaaagtt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6596 gtcctgaaagactttcacaaacacccatataatgggggcgcctgtgaagcagaaaaagtt 6655
Query: 589 agtatgatccatttggcgtgcggaaatagtgaccaattcgtaaaccttgtggtatttcaa 648
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 6656 agtatgatccatttggcgtgcggaaatagtgaccaatcggtaaa-cttgtggtatttcaa 6714
Query: 649 ctctcagctttcgcggaaaacattatttgaaaggaaaggaagcggtactttgcacagctt 708
|||||||||| ||||||||||| |||||||| | || ||||||||||| ||||||||| |
Sbjct: 6715 ctctcagcttccgcggaaaacaatatttgaaggaaagggaagcggtacattgcacagcat 6774
Query: 709 gcccagttgggttaattgggccagtttgacccctagaccttgtttttgataaataattga 768
|||||||||||| ||||||||||||| ||||||||||||| | ||||||| |||||||||
Sbjct: 6775 gcccagttgggtcaattgggccagttggacccctagacctcg-ttttgatgaataattga 6833
Query: 769 gggctacagtgctccaat 786
|||||||||||||||||
Sbjct: 6834 -ggctacagtgctccaat 6850
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8700
Number of Sequences: 1807
Number of extensions: 8700
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)