BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig432 1298 0.0
>3x_Contig432
Length = 1594
Score = 1298 bits (655), Expect = 0.0
Identities = 704/721 (97%)
Strand = Plus / Plus
Query: 50 ttaacatcaagaacagactctcgtatacccttcacataatctttgcacaatcgcagatat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttaacatcaagaacagactctcgtatacccttcacataatctttgcacaatcgcagatat 238
Query: 110 gccatcacatcagtccaaaaatcgagatacactatggcatgggggtattgggacaggtaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gccatcacatcagtccaaaaatcgagatacactatggcatgggggtattgggacaggtaa 298
Query: 170 gtatagaaggaccataaatccaaaggcgcagcggtttgttggtttaatacttcatataga 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtatagaaggaccataaatccaaaggcgcagcggtttgttggtttaatacttcatataga 358
Query: 230 gtgggtaagcgggctcgctgggaatttggcaatttttccatgactattgctcagcggttt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtgggtaagcgggctcgctgggaatttggcaatttttccatgactattgctcagcggttt 418
Query: 290 gctaacactggaatggcttcaaagtgctgttaagatgtccggtatttcaataggagcagt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gctaacactggaatggcttcaaagtgctgttaagatgtccggtatttcaataggagcagt 478
Query: 350 ttctttgaatatactgtgacaacaacaactacggactggttgaaagagataaattatatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttctttgaatatactgtgacaacaacaactacggactggttgaaagagataaattatatt 538
Query: 410 tctcagataacgtgtaaggtgccacttgcctgttaattgaagtatttcgacgaccgttag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctcagataacgtgtaaggtgccacttgcctgttaattgaagtatttcgacgaccgttag 598
Query: 470 ctacacaaactgaccgttagcaattgagtaggaattggtgagttgtcaatatgtctttct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctacacaaactgaccgttagcaattgagtaggaattggtgagttgtcaatatgtctttct 658
Query: 530 catctctgtattttagaatgagttgagtttcagtttcatgcttttttttttttgtaaggc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 catctctgtattttagaatgagttgagtttcagtttcatgcttttttttttttgtaaggc 718
Query: 590 cagatcaagaattttnctcgattangaaaaaccagcatgtaatttgcatcaacaatgggt 649
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 719 cagatcaagaatttttctcgattaggaaaaaccagcatgtaatttgcatcaacaatgggt 778
Query: 650 ctaatagtttggaaaggatggggaatcaatttcaagtattcgatactcgaggattatatt 709
|||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct: 779 ctaatagtttggaaaggatgggaaatcaattccaagtattcgatactcgagaattatatg 838
Query: 710 gggcacttttttacttaaacaactaaaaattttccttatttttttactggctttcatctt 769
|| ||||| ||||| |||||||| |||| | ||| || || ||||||||||| ||||||
Sbjct: 839 ggcaactttcttactaaaacaacttaaaaatatccataattatttactggcttccatctt 898
Query: 770 t 770
|
Sbjct: 899 t 899
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,129
Number of Sequences: 1807
Number of extensions: 13129
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)