BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC07RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1249 0.0
>3x_Contig1776
Length = 26138
Score = 1249 bits (630), Expect = 0.0
Identities = 674/685 (98%), Gaps = 3/685 (0%)
Strand = Plus / Plus
Query: 45 gctttagcca-gatacttcttggtgaaggaggcagaacaaataaagtgctttgagccatt 103
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11823 gctttagccaagatacttcttggggaaggaggcagaacaaataaagtgctttgagccatt 11882
Query: 104 atgaaatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11883 atgaaatgatatccaacaaaaagatgcttctgtatggacgtccttatgacctgaactgaa 11942
Query: 164 tattgaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatctaag 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11943 tattgaaaatcaaacttgaacacacactgcacaaacaaataattgtgttctgaatcgaag 12002
Query: 224 taacaagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaa 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12003 taacaagaatggaaaaaatttactattaatcgtacccataacatatttatacaaagtaaa 12062
Query: 284 tgtgagaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12063 tgtgagaagttttgaaaaaaaaaactgaagaaaaaaaaaaacttggaaaaacataaaaat 12122
Query: 344 tttgaatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12123 tttgaatagtcatttttccttatacgggctattttaactgtagtgatcaagtaagtaatt 12182
Query: 404 gaaaggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgtttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12183 gaaaggcctttagagcttcttcttttcacgtagcggctggaacaaaaagaaatttgtttt 12242
Query: 464 ggattttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12243 ggattttcaatttttggcttcgagagatgagccgtgggtaatgattgggggcaagtatca 12302
Query: 524 ttggctatgagggcattgtcaaatggctagaagaatgattgtgtacatgtggcaacaata 583
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 12303 ttggctatgagggcattgtcaaatggctagaagaatgatggtgtacatgtggcaacaata 12362
Query: 584 aaatggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtcatct 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12363 aaatggttgaagtctgttactgtacagtacttctgtacattgtatatacagaagtcatct 12422
Query: 644 tccgctcgttttgacttaggtcacgtgacttattttaagggnatttcttttttttttgta 703
|||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||||||
Sbjct: 12423 tccgctcgttttgactaaggtcacgtgacttatttaaagtgta-ttcttttttttttgta 12481
Query: 704 attttcccctggagaaaagaaacct 728
||||| ||||| |||||||||||||
Sbjct: 12482 atttt-ccctgtagaaaagaaacct 12505
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,271
Number of Sequences: 1807
Number of extensions: 17271
Number of successful extensions: 171
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)