BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 900 0.0
>3x_Contig1794
Length = 36744
Score = 900 bits (454), Expect = 0.0
Identities = 555/582 (95%), Gaps = 5/582 (0%)
Strand = Plus / Minus
Query: 84 aacatcaagttttgagttgtttctttattcatgtatttaacttttttagtatccttctca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23186 aacatcaagttttgagttgtttctttattcatgtatttaacttttttagtatccttctca 23127
Query: 144 atcaatattgtatatactatatatttattcaaatagcagcatatgtgttcttgcatttgt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23126 atcaatattgtatatactatatatttattcaaatagcagcatatgtgttcttgcatttgt 23067
Query: 204 tcttcaagaggtcaatttgttttacttccttgtatcattcttaccaaccaatgtccttgc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23066 tcttcaagaggtcaatttgttttacttccttgtatcattcttaccaaccaatgtccttgc 23007
Query: 264 gatgtactggcttggccacctttaactttcctttagtcaagttttcaagtggatacatag 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23006 gatgtactggcttggccacctttaactttcctttagtcaagttttcaagtggatacatag 22947
Query: 324 atactttgcactcaccaccaagctcttcaatcactgataaagattgagtttcaagatcca 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22946 atactttgcactcaccaccaagctcttcaatcactgataaagattgagtttcaagatcca 22887
Query: 384 cagattttagaatggccacaaacggcgtttctattcccaagctgtacgttaaaccatcgt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22886 cagattttagaatggccacaaacggcgtttctattcccaagctgtacgttaaaccatcgt 22827
Query: 444 caaaagtaaattcagcgtttcttggcacaagtatcatacctgttaccaatttttctagcg 503
|||| ||||||||||||||||||| |||||||||| ||||| |||||||||| ||||||
Sbjct: 22826 caaaggtaaattcagcgtttcttgcaacaagtatcaaacctggtaccaattttcctagcg 22767
Query: 504 cag-ctcatctattgcggtgttataagcatgttcaaaaaacgtgatacccgtaagttc-t 561
||| |||||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct: 22766 cagtttcatctattgcggtgttataagcatgttcaaaaacggtgata-ccgtaagttctt 22708
Query: 562 tgagcaattggtgggactagattatttatgggaccccatattttgagaattaattgatga 621
||||||||||||||||||||||||| ||| |||||| |||||| |||| ||| ||||
Sbjct: 22707 tgagcaattggtgggactagattatctattggacccaatatttgaggaataaatgaatga 22648
Query: 622 acagctttaccaacccatttggttactggttttcggaaattg 663
|||||||||||| ||||| |||||| ||||||| ||||||
Sbjct: 22647 caagctttaccaacacattt-gttact-gttttcgtaaattg 22608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7288
Number of Sequences: 1807
Number of extensions: 7288
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)