BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC09RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1191 0.0
>3x_Contig1765
Length = 24733
Score = 1191 bits (601), Expect = 0.0
Identities = 643/655 (98%), Gaps = 2/655 (0%)
Strand = Plus / Minus
Query: 38 gcttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatattta 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17599 gcttgctgaattctgttaatgtaagcctttgaaatggcattccaacttctcatatattta 17540
Query: 98 gccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17539 gccaaacattggtcgacgcagttatcttgagaagcagcatatggagcattcagacatttc 17480
Query: 158 tcaaaacagttctcagtgactttgttaactaactcggtagcattggcgatggcttattct 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 17479 tcaaaacagttctcagtgactttgttaactaactcggtagcattggcgatggctaattct 17420
Query: 218 tgagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17419 tgagagatttgagatttaagttgggtcttgacatcgctaggactggatgtggctggggta 17360
Query: 278 ccagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttcta 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17359 ccagatgatgaagagctaccaccaaagatcgaagttaaagccatatcttaatgtgttcta 17300
Query: 338 tgatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17299 tgatagattattgatccgatgcaatgttcagaggggcctggatgatagattatagctgtt 17240
Query: 398 aattgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagtttttt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17239 aattgtagattgccaatggatatttcagtttatgctaaagcttcaaatcattagtttttt 17180
Query: 458 ttttcaatatgaggaagaaacattccttcacatcgagcagcantggaagggatagataac 517
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 17179 ttttcaatatgaggaagaaacattccttcacatcgagcagcaatggaagggatagataac 17120
Query: 518 tattgtttcagcccgtttcacaacctcttctttcctgcgatttaccgcgttattggaaga 577
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 17119 tattgtttcagcccgtttcacaacctctcctttcctgcgatttaccgcgttattggaaga 17060
Query: 578 tatgtttgggagttccccanagtgatttacttactaatatgaaccactgtccaagtactt 637
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17059 tatgtttggaagttccccagagtgatttacttactaatatgaaccactgtccaagtactt 17000
Query: 638 gtcacacgaagcatttattgtagtcccatgaattatcattacggtactggacccc 692
|||||||| ||||| || ||||||| |||| |||||||||||| ||||| |||||
Sbjct: 16999 gtcacacggagcatata-tgtagtcgcatg-attatcattacgttactgtacccc 16947
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9072
Number of Sequences: 1807
Number of extensions: 9072
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)