BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC11FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1396 1142 0.0
>3x_Contig1396
Length = 8488
Score = 1142 bits (576), Expect = 0.0
Identities = 658/678 (97%), Gaps = 6/678 (0%)
Strand = Plus / Plus
Query: 86 ctagttatcaagaaaaatacaatggagccttttgaatcgagttaaatataacatattcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 ctagttatcaagaaaaatacaatggagccttttgaatcgagttaaatataacatattcaa 3433
Query: 146 atcggtctgaatattttctgttcacgtaattcaattgttttagaaagattttgtaacaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3434 atcggtctgaatattttctgttcacgtaattcaattgttttagaaagattttgtaacaac 3493
Query: 206 gagaccccacaatcacatcaaattttaacgaaataagttcactgatcctaagatcagttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3494 gagaccccacaatcacatcaaattttaacgaaataagttcactgatcctaagatcagttt 3553
Query: 266 aatcctgtttgaagaactcttttcataaaatataatctttgatgacgaattcagttgggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3554 aatcctgtttgaagaactcttttcataaaatataatctttgatgacgaattcagttgggg 3613
Query: 326 gaacgttttcctcgaaatggaaacagtcgctgcattacttctcaagaagagcaagaatta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3614 gaacgttttcctcgaaatggaaacagtcgctgcattacttctcaagaagagcaagaatta 3673
Query: 386 tgaagagacataactgtgtgatcctggcggtcttttttgtcatcatagtcttctctgtct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3674 tgaagagacataactgtgtgatcctggcggtcttttttgtcatcatagtcttctctgtct 3733
Query: 446 tcggtggtgatagtatcaagcaattatacgatattagctctgggtttggttctgacacta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3734 tcggtggtgatagtatcaagcaattatacgatattagctctgggtttggttctgacacta 3793
Query: 506 ttggagaaggttataatggangtagtggtttttccaatctactttctgactcatcgacag 565
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 3794 ttggagaaggttataatggaggtagtggtttttccaatctacttcctgactcatcgacag 3853
Query: 566 ctaattcgaactctggaggtcaagtttcttctgaac-tacattca-taatgcagtcagtn 623
|||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 3854 ctaattcgaactctggaggtcaagtttcttctgaacttacatccagtaatgcagtcagta 3913
Query: 624 atggtgtcacaattagcagtgacctgaaagatttctatc-ggaaatt-ttaccacatttg 681
||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||
Sbjct: 3914 atggtgtcacaattagcagtgacctgaaagatttctatcaggaaattatgaccacattga 3973
Query: 682 aagaaacagctttgaaagggtaaattaaaagtttagaagcttgagggttgttaacttttc 741
| |||||||| |||||| ||||||||| ||||| |||||| |||||||||| ||| ||||
Sbjct: 3974 aggaaacagcattgaaa-ggtaaattagaagttaagaagcctgagggttgtaaac-tttc 4031
Query: 742 cgacattggtgtcgaaaa 759
||||| ||||||||||||
Sbjct: 4032 cgacactggtgtcgaaaa 4049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7596
Number of Sequences: 1807
Number of extensions: 7596
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)