BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC11RM1.SCF screened BAC_end
(900 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1061 0.0
>3x_Contig1522
Length = 7810
Score = 1061 bits (535), Expect = 0.0
Identities = 599/615 (97%), Gaps = 4/615 (0%)
Strand = Plus / Minus
Query: 47 ttattttagataaacaaatcgaacaatcctctaattccgtcccgctggtcatcttttgca 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6383 ttattttagataaacaaatcgaacaatcctctaattccgtcccgctggtcatcttttgca 6324
Query: 107 aggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaagatt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6323 aggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaagatt 6264
Query: 167 tattgagctccactctcattttaacacacctgtaaatttcttccgcaccatcccggaagt 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6263 tattgagctccactctcattttaacacacctgtaaatttcttccgcaccaccccggaagt 6204
Query: 227 ctaatccgagttgtaatatatcgccgtcctttaacagaaaatccttggacatagtagctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6203 ctaatccgagttgtaatatatcgccgtcctttaacagaaaatccttggacatagtagctg 6144
Query: 287 gctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttcacaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6143 gctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttcacaa 6084
Query: 347 accaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttactct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6083 accaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttactct 6024
Query: 407 tgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgaccttttctg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023 tgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgaccttttctg 5964
Query: 467 tgtacctttcgattaccaactgagaacccagaccagcagttcttatgatcggatc-atat 525
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct: 5963 tgtaccttccgattaccaactgagaaccaggaccagcagttcttatgatcggatcaaaat 5904
Query: 526 atgaaccggggttaccagccgatgagttgtctat-aatgcggtcaatcttaaag-gaata 583
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 5903 agaaaccggggttaccagccgatgagttgtctataaatgcggtcaatcttaaagtgaata 5844
Query: 584 attcgtttttatccttaccatttctaacagttttatcatctgcagcttccggct-ggccc 642
|| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 5843 atccgtttttatccttacgatttctaacagtttcatcatctgcagcttccggctgggccc 5784
Query: 643 attcatgtgcaaagt 657
| ||| |||||||||
Sbjct: 5783 aatcaggtgcaaagt 5769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6577
Number of Sequences: 1807
Number of extensions: 6577
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 900
length of database: 10,358,551
effective HSP length: 16
effective length of query: 884
effective length of database: 10,329,639
effective search space: 9131400876
effective search space used: 9131400876
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)