BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZC12FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1223 0.0
>3x_Contig1630
Length = 14771
Score = 1223 bits (617), Expect = 0.0
Identities = 681/695 (97%), Gaps = 7/695 (1%)
Strand = Plus / Plus
Query: 86 taattatggtctaaatttcgaaaatgaaaagaatgcctttgtcaagaggaatttcaaaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13972 taattatggtctaaatttcgaaaatgaaaagaatgcctttgtcaagaggaatttcaaaca 14031
Query: 146 aatcactcttcaacttttcagtcgacctacattcagggacactttagtgagaatgctagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14032 aatcactcttcaacttttcagtcgacctacattcagggacactttagtgagaatgctagt 14091
Query: 206 ggaatatggtccatattcaaatttgagtgaaaaatctgctcaagttgtcagccacatttt 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14092 ggaatatggtccaaattcaaatttgagtgaaaaatctgctcaagttgtcagccacatttt 14151
Query: 266 aagagaagagaaaaacatgtctatcattagagatatgttgatatatggaatgaatatcga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14152 aagagaagagaaaaacatgtctatcattagagatatgttgatatatggaatgaatatcga 14211
Query: 326 aaatgaagcaatagacaacaccattgatctatatcggtatttgaacttcaccaatacttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14212 aaatgaagcaatagacaacaccattgatctatatcggtatttgaacttcaccaatacttg 14271
Query: 386 gttgttccagatactcaccgaattcaatgtaaaaaactctaatgctgaagatctatcgga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14272 gttgttccagatactcaccgaattcaatgtaaaaaactctaatgctgaagatctatcgga 14331
Query: 446 ctttttctccagcatcgtcggcgcaattggttacaactcattattaccaaaaatattcag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14332 ctttttctccagcatcgtcggcgcaattggttacaactcattattaccaaaaatattcag 14391
Query: 506 taatatctcagacaaaaaacaagtgtcgacccttttgacagttattgaaagacaattttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14392 taatatctcagacaaaaaacaagtgtcgacccttttgacagttattgaaagacaattttt 14451
Query: 566 agcaagagttttggagacagaaaaatctgcgttagtcttcttgcatantatgatggatac 625
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 14452 agcaagagttttggagacagaaaaatctgcgttagtcttcttgcatataatgatggatac 14511
Query: 626 agaaattgtactaagcaggcatctggttaatatgtcaagccntggggatggattcagagg 685
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 14512 agaaattgtactaagcaggcatctggtaaatatgtcaagcc-tggggatggattcagagg 14570
Query: 686 tttttggaaactgttc-aaaatactattgctacatttgcaaaaaatgcct-acgattcat 743
|||| | |||||||| |||||||||||||||||||||| |||||||||| ||||| |||
Sbjct: 14571 tttt--ggaactgttcaaaaatactattgctacatttgc-aaaaatgcctaacgatacat 14627
Query: 744 taaagaaattcgacgaaaaacttgaacgagctatt 778
||||||||| ||||| |||||||||||||||||||
Sbjct: 14628 taaagaaatacgacg-aaaacttgaacgagctatt 14661
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)