BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD01FM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig615 1138 0.0
>3x_Contig615
Length = 2578
Score = 1138 bits (574), Expect = 0.0
Identities = 655/682 (96%)
Strand = Plus / Minus
Query: 88 taaatctaacatcctaccaccaattggatccaaagagtcatcaatttcatgaacaaactt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 taaatctaacatcctaccaccaattggatccaaagagtcatcaatttcatgaacaaactt 1660
Query: 148 ttcatttagatccaggggtttcgaagtatcgatatcatcgtcatcttcagtagtttcttg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 ttcatttagatccaggggtttcgaagtatcgatatcatcgtcatcttcagtagtttcttg 1600
Query: 208 caactgcgctaacacataacgtctggcgcttttcttggaggcatcagaaagagtcatcat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 caactgcgctaacacataacgtctggcgcttttcttggaggcatcagaaagagtcatcat 1540
Query: 268 tttgaaaacttgattaggtagtgattctgctagtagttggttcggagatacagtttcagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tttgaaaacttgattaggtagtgattctgctagtagttggttcggagatacagtttcagt 1480
Query: 328 caaaaagataacatgggctaaattcatctgcaccagcatggctgcccaatcactcaattc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 caaaaagataacatgggctaaattcatctgcaccagcatggctgcccaatcactcaattc 1420
Query: 388 tttatagacaaagccattcatttctgctctgttgttgaaacggtcgataactattacagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 tttatagacaaagccattcatttctgctctgttgttgaaacggtcgataactattacagg 1360
Query: 448 tttcttttcaggatgttgttgtaagtaatcttcttctttcacattaataatactgtctcc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 tttcttttcaggatgttgttgtaagtaatcttcttctttcacattaataatactgtctcc 1300
Query: 508 acttccgataacaggcttgtatcccttcaatgcgatgtgcctgattgacatcatagcagt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 acttccgataacaggcttgtatcccttcaatgcgatgtgcctgattgacatcatagcagt 1240
Query: 568 ggacaacatatttctgaattgcaactccttagattcagaaagacctgacttttgaccagt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 ggacaacatatttctgaattgcaactccttagattcagaaagacctgacttttgaccagt 1180
Query: 628 cagaccctgcactgccaaatccattaagttattgacggaattgacccaccgccaattttg 687
||||||||||||||||||||||| || |||| |||| || |||||||| | | || |
Sbjct: 1179 cagaccctgcactgccaaatccagtaggttagtgacagagttgacccagggaaatattgg 1120
Query: 688 gaaataaccaagttgactggccgggcggctttataacttaacagcaggtctggacttaag 747
||||| |||||||||||||||| | ||| | ||||| | ||| |||||||||||
Sbjct: 1119 gaaattcccaagttgactggccgcgtttcttaaaaacttcgcgtcagttctggacttaat 1060
Query: 748 taatttatcactgtccaaatat 769
||||||||||| ||||||||||
Sbjct: 1059 taatttatcacagtccaaatat 1038
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6607
Number of Sequences: 1807
Number of extensions: 6607
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)