BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZD01RM1.SCF screened BAC_end
         (873 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig776                                                         1340   0.0  

>3x_Contig776 
          Length = 3521

 Score = 1340 bits (676), Expect = 0.0
 Identities = 744/760 (97%), Gaps = 5/760 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   cgcaaaagactgttggccactcccgacaaatctgctacgttacaagatctagttactaat 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 cgcaaaagactgttggccactcccgacaaatctgctacgttacaagatctagttactaat 2527

                                                                        
Query: 109  gaaagagcagagggtaagaaaacagccagtgaaggtttattatggttaaccagaggcttg 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 gaaagagcagagggtaagaaaacagccagtgaaggtttattatggttaaccagaggcttg 2467

                                                                        
Query: 169  cagttcacggcccaggccatgaaagaaacgattgagaaccccactacggaaatgactgat 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 cagttcacggcccaggccatgaaagaaacgattgagaaccccactacggaaatgactgat 2407

                                                                        
Query: 229  acctttattgctgcttataaaaaaactttaagtcaatatcacggtatgctagtgaaacct 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 acctttattgctgcttataaaaaaactttaagtcaatatcacggtatgctagtgaaacct 2347

                                                                        
Query: 289  atattcaaattggccatgaaggcatgtccatacagaaaagatttctttgccaagcttggt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 atattcaaattggccatgaaggcatgtccatacagaaaagatttctttgccaagcttggt 2287

                                                                        
Query: 349  gctgatcaagagaaagtcaatactcagcttaaggcctggttggctgctttggaaaatatt 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gctgatcaagagaaagtcaatactcagcttaaggcctggttggctgctttggaaaatatt 2227

                                                                        
Query: 409  gtttctattttgttagaattcttagccaaaacatgcaaggatttgtgaagcagcaatcat 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 gtttctattttgttagaattcttagccaaaacatgcaaggatttgtgaagcagcaatcat 2167

                                                                        
Query: 469  ttccttagcattgcgctcaagataaaatgatccatacccatagtacatttaaaagtctaa 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 ttccttagcattgcgctcaagataaaatgatccatacccatagtacatttaaaagtctaa 2107

                                                                        
Query: 529  tattattatatataaagtagataatatttaaaggacactttacagatccacttaatggaa 588
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2106 tattattatatataaagtagataatattaaaaggacactttacagatccacttaatggaa 2047

                                                                        
Query: 589  agggttccatagcatatgtaaccgagaattacttccttgca-gcatttc-aaagatggat 646
            ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct: 2046 agggttccatagcatatgtaaccgagaattacttc-ttgcaagcatttcaaaagatggat 1988

                                                                        
Query: 647  actagctattggagggtatgacaggtagatgaaatagtgtatctgttattaaaacttgaa 706
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1987 actagctattggaggttatgacaggtagatgaaatagtgtatctgttattaaaacttgaa 1928

                                                                        
Query: 707  acttgaccttatgatccgtttcctgtactttcgatggatgggccttaagnaaggatttat 766
            |||||||||||||||||||||||||||||| |||||||||| | | ||| ||||||| ||
Sbjct: 1927 acttgaccttatgatccgtttcctgtacttccgatggatggacataaag-aaggattaat 1869

                                                    
Query: 767  tgaaaacagttttccaccaaaggaaattgaacaaaaaaat 806
             ||||||||| | |||| ||| ||||||||||||||||||
Sbjct: 1868 agaaaacagtataccacgaaa-gaaattgaacaaaaaaat 1830


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7285
Number of Sequences: 1807
Number of extensions: 7285
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)