BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD02FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1437 0.0
>3x_Contig1669
Length = 15503
Score = 1437 bits (725), Expect = 0.0
Identities = 792/808 (98%), Gaps = 5/808 (0%)
Strand = Plus / Plus
Query: 90 ctctgtttccagttgctgttgctgtgtttcaatttgagcatttaattcttctacatgaga 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11232 ctctgtttccagttgctgttgctgtgtttcaatttgagcatttaattcttctacatgaga 11291
Query: 150 tttatgtttttcaattgaatcacgaagctcctggatattttcttcaattttacccttttg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11292 tttatgtttttcaattgaatcacgaagctcctggatattttcttcaattttacccttttg 11351
Query: 210 atcctgtaactccgtgtgatggtcttctgcagcagcgaggtcatttttgaatggaaccag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11352 atcctgtaactccgtgtgatggtcttctgcagcagcgaggtcatttttgaatggaaccag 11411
Query: 270 taactcttcctggtctttcttagcctgttcaagttcattttcattgcttttttgtaagtc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11412 taactcttcctggtctttcttagcctgttcaagttcattttcattgcttttttgtaagtc 11471
Query: 330 ggcacattctgttgtaatcatttcatcctctctctttagctcttcttcattatcctcttt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11472 ggcacattctgttgtaatcatttcatcctctctctttagctcttcttcattatcctcttt 11531
Query: 390 taatttagcaagttccgccttcttagcttcgagtgcctcttttaatttagcgacctcact 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11532 taatttagcaagttccgccttcttagcttcgagtgcctcttttaatttagcgacctcact 11591
Query: 450 gtccttctgcgtacaaagattctggaactttttggccaaagtagcttcgatatcagcagt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11592 gtccttctgcgtacaaagattctggaactttttggccaaagtagcttcgatatcagcagt 11651
Query: 510 ttccttctgatgattttcgaaagctttagcctgtagcaaagaatcattgttttgcttttc 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11652 ttccttctgatgattttcgaaagctttagcctgtagcaaagaatcattgttttgcttttc 11711
Query: 570 agtttgaatattgacccattcttcgtattgctgttggtaatccacgcttcttttttggat 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11712 agtttgaatattgacccattcttcgtattgctgttggtaatccacgcttcttttttggat 11771
Query: 630 atcaatgtccattgcacgttgagcgccggttcttttgtcaacttcatcaagcacttggtg 689
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 11772 atcaatgtccattgcacgttgagcgccggttctttggtcaacttcatcaagcac-tggtg 11830
Query: 690 caatgagacccttcgcaatattatcgatatcatcaggagctagccataaaccaccgccc- 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11831 caatgagacccttcgcaatattatcgatatcatcaggagctagccataaaccaccgccca 11890
Query: 749 aatttacttttattggcagtttcagaagcagaagaacgagtctttctt-aattttcctga 807
||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 11891 aatttac-tttattggcagtagcagaagcagaagaacgagtctttcttaaattttcctga 11949
Query: 808 acgacactagcagcagccctggtatactccgcggttctaaagatagccctttgagaa-tc 866
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct: 11950 gcgacactagcagcagccctgttatactccgcgtttctaaagatagccctttgagaagtc 12009
Query: 867 tnacgattcatggttttcaaacgttgtt 894
| ||||| ||||| | |||||||||||
Sbjct: 12010 tcacgatcaatggtatccaaacgttgtt 12037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7534
Number of Sequences: 1807
Number of extensions: 7534
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)