BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD02RM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1033 1417 0.0
>3x_Contig1033
Length = 4240
Score = 1417 bits (715), Expect = 0.0
Identities = 786/801 (98%), Gaps = 7/801 (0%)
Strand = Plus / Minus
Query: 48 atagaggaattatctgggtctttgcaggtactgttatttctttttctacaagaatgtatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 atagaggaattatctgggtctttgcaggtactgttatttctttttctacaagaatgtatg 1105
Query: 108 aagatagagccacttatgatggccccctatgaagataacatgttagaactctatcttatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aagatagagccacttatgatggccccctatgaagataacatgttagaactctatcttatc 1045
Query: 168 tatgataagccaggtttactaggcttcctcaaaactaaatccaattacaatatagataaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tatgataagccaggtttactaggcttcctcaaaactaaatccaattacaatatagataaa 985
Query: 228 gctattaaattttgtcaagaagagaataacttgcataatgagttgatatttttgtggagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gctattaaattttgtcaagaagagaataacttgcataatgagttgatatttttgtggagt 925
Query: 288 aagataggtgaaaatagaaaagcattatcgttaattatagaccgcctagatgacccaaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 aagataggtgaaaatagaaaagcattatcgttaattatagaccgcctagatgacccaaaa 865
Query: 348 cttgcctttcaatttgtcaaggactcgcttgacaatgaattgtggaactttcttataaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 cttgcctttcaatttgtcaaggactcgcttgacaatgaattgtggaactttcttataaat 805
Query: 408 tatagtctagacaggccgaagtttatcaaggctattttggacagctctgaactatttgaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatagtctagacaggccgaagtttatcaaggctattttggacagctctgaactatttgaa 745
Query: 468 gacgaaattgccacagtggtcgataagattcctgataatatcgaagttgaagggctcaaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gacgaaattgccacagtggtcgataagattcctgataatatcgaagttgaagggctcaaa 685
Query: 528 aaatcgttagaagatattgcaactaataatgagttaaaattgggagtcgtgagtagcatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaatcgttagaagatattgcaactaataatgagttaaaattgggagtcgtgagtagcatt 625
Query: 588 ttcaaaattgttgatgatgagactaaggagatggtagcggaatttttgattattcgaaag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcaaaattgttgatgatgagactaaggagatggtagcggaatttttgattattcgaaag 565
Query: 648 atnagtaaaatctttcataactaaatataagtgccgagcagtcgtctgcatgagagttgc 707
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 564 aaaggtaaaatctttcataactaaatataggtgccgagcagtcgtctgcatgagagttgc 505
Query: 708 ttgataattaactgtaacaattcctattaagttgatataactaagtaaccccagtaaaag 767
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 504 ttgataattaactgtaacaattcctataaagttgatataactaagtaa-cccagtaaaag 446
Query: 768 ttatggttcatcattaacg-taattaatttatgttggaactagttggaactancgttttt 826
||||||||||||| ||||| |||| |||||||||| ||||||||| |||||| || ||||
Sbjct: 445 ttatggttcatca-taacgttaatcaatttatgtt-gaactagtt-gaactagcg-tttt 390
Query: 827 caacaaaaattttcgaaaaat 847
|| | ||||||||||||||||
Sbjct: 389 cagc-aaaattttcgaaaaat 370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7383
Number of Sequences: 1807
Number of extensions: 7383
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)