BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD03FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig869 1534 0.0
3x_Contig1263 222 1e-57
3x_Contig1503 220 4e-57
3x_Contig1722 204 2e-52
3x_Contig1624 204 2e-52
>3x_Contig869
Length = 2873
Score = 1534 bits (774), Expect = 0.0
Identities = 816/828 (98%), Gaps = 2/828 (0%)
Strand = Plus / Plus
Query: 87 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1862 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 1921
Query: 147 tgtaatctggagatcgggcgttcgactcgcccccgggagacttatctttttttttcgttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1922 tgtaatctggagatcgggcgttcgactcgcccccgggagacttatctttttttttcgttt 1981
Query: 207 tcatcttcccatttcttttagttcccacgtcatcaccatctaataatagcaagagcaaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1982 tcatcttcccatttcttttagttcccacgtcatcaccatctaataatagcaagagcaaag 2041
Query: 267 cttatccattatactactactgcctctactctcacattacatcttcccagggcatcagtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2042 cttatccattatactactactgcctctactctcacattacatcttcccagggcatcagtt 2101
Query: 327 tcaacggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcacatg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2102 tcaacggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcacatg 2161
Query: 387 cgatctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaactgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 cgatctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaactgct 2221
Query: 447 ccctctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgacaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2222 ccctctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgacaat 2281
Query: 507 cttgtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatttgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 cttgtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatttgt 2341
Query: 567 ccttttctaaatataacccttttgccgtacatagtactatatggtctctttggttcggaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342 ccttttctaaatataacccttttgccgtacatagtactatatggtctctttggttcggaa 2401
Query: 627 cttgggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgtact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2402 cttgggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgtact 2461
Query: 687 gtttgtattccaattcgtccagtttagagtaccatntgttaatgagtttttcatcatgag 746
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2462 gtttgtattccaattcgtccagtttagagtaccatttgttaatgagtttttcatcatgag 2521
Query: 747 aatggatcanaggtcgaatttacagttgggtagagttgatttcgacacagtgtggagtcc 806
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 aatggatcaaaggtcgaattaacagttgggtagagttgatttcgacacagtgtggagtcc 2581
Query: 807 agcggtggggagttgtcgaattgtgtttgcagtaggaaagagatcttgcacgaaggggtg 866
|||||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 2582 agcggt-gggagtgttcgaattgtgtttgcagtaggaaggagatctgaaacgaaggggtg 2640
Query: 867 tatggtggcagcggttccatggttggtggtttgatgttgctgatctgc 914
|| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2641 tagggtggcagcggttccatggttggt-gtttgatgttgctgatctgc 2687
>3x_Contig1263
Length = 6840
Score = 222 bits (112), Expect = 1e-57
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 88 ctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaattt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5478 ctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaattt 5537
Query: 148 gtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5538 gtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttt 5589
>3x_Contig1503
Length = 10719
Score = 220 bits (111), Expect = 4e-57
Identities = 114/115 (99%)
Strand = Plus / Minus
Query: 87 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3591 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 3532
Query: 147 tgtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttttt 201
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3531 tgtaatctggagatcgggcgttcgactcgcccccgggagacttattttttttttt 3477
>3x_Contig1722
Length = 17718
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 87 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 5718
Query: 147 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 189
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5717 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 5675
>3x_Contig1624
Length = 12551
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 87 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6093 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 6034
Query: 147 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 189
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6033 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 5991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6001
Number of Sequences: 1807
Number of extensions: 6001
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 5
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)