BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD03RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 1481 0.0
>3x_Contig1760
Length = 27266
Score = 1481 bits (747), Expect = 0.0
Identities = 811/826 (98%), Gaps = 5/826 (0%)
Strand = Plus / Plus
Query: 48 ttggaatgaacaaatttatgcgctttgatcgatttgatggtaacttctacaactttagag 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8715 ttggaatgaacaaatttaggcgctttgatcgatttgatggtaacttctacaactttagag 8774
Query: 108 atactcttagaatgtgatttacttggatcatatttgtacctcaatgggggcaacgaaaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8775 atactcttagaatgtgatttacttggatcatatttgtacctcaatgggggcaacgaaaca 8834
Query: 168 ccaaggtttgtaacttcatgtaatggtttgcggtagttcgatgcaagttttggctcattc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8835 ccaaggtttgtaacttcatgtaatggtttgcggtagttcgatgcaagttttggctcattc 8894
Query: 228 aaagcggccaaactcaaaaatttaccaacgaaatcaagttcagacatgattggaggtggg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895 aaagcggccaaactcaaaaatttaccaacgaaatcaagttcagacatgattggaggtggg 8954
Query: 288 atgtgcgatattgtagtagtttagttccttatactcccttatacatctcttcattagatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8955 atgtgcgatattgtagtagtttagttccttatactcccttatacatctcttcattagatg 9014
Query: 348 tctaacttgtgttagtgttaatctgaacataaatatcaattccgttaaatttatttcaat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9015 tctaacttgtgttagtgttaatctgaacataaatatcaattccgttaaatttatttcaat 9074
Query: 408 tcctacataaaagggtaaaaacacgaacgatatcagatcaatacgggaaataagatgtag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 9075 tcctacataaaagggtaaaaacacgaacgatatcagatcaatacgggaaataagaggtag 9134
Query: 468 aaacggcattctaccaggtaacattgcaacacaaatggtatcactggtactggcagatac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9135 aaacggcattctaccaggtaacattgcaacacaaatggtatcactggtactggcagatac 9194
Query: 528 tgcagacagttcagatctatctaaagctgcgattaccgttgaagaatcaacttctgcaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9195 tgcagacagttcagatctatctaaagctgcgattaccgttgaagaatcaacttctgcaca 9254
Query: 588 acaaccgaaattcttcaattaccatgaatttgtgattacaaagtacagagcactagatga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9255 acaaccgaaattcttcaattaccatgaatttgtgattacaaagtacagagcactagatga 9314
Query: 648 tgaatcatgcgaagagcatggacctgagaatccaatctgcatcacccattttccaaacat 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9315 ggaatcatgcgaagagcatggacctgagaatccaatctgcatcacccattttccaaacat 9374
Query: 708 atacgtacctgaaagaagcgatgaatttag-atcactagagtcgttcgaattcccag-at 765
||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 9375 atacgtacctgaagaaagcgatgaatttagaaccactagagtcgttcgaattcccagaag 9434
Query: 766 gtttgagtcatccacanaatttcctaatttcagcacacagttacctgggtctgaaccagc 825
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9435 gtttgagtcatccacagaatttcctaatttcagcacacagttacctgggtctgaaccagc 9494
Query: 826 agcctta-cagatactcacaancaagaatttcgtttccggcaggag 870
||||||| ||||||||||||| |||| | |||| ||||||||||||
Sbjct: 9495 agccttaccagatactcacaa-caaggagttcg-ttccggcaggag 9538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6271
Number of Sequences: 1807
Number of extensions: 6271
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)