BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD04FM1.SCF screened BAC_end
(884 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1227 0.0
>3x_Contig1801
Length = 57606
Score = 1227 bits (619), Expect = 0.0
Identities = 666/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Minus
Query: 86 taggtgagtctgctactgcgcacagagactgcacaaaaggcctccaatgttgggaccagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38997 taggtgagtctgctactgcgcacagagactgcacaaaaggcctccaatgttgggaccagg 38938
Query: 146 ccaacgtgtcatatggggttaaagccaaggtaacaccatttcctgtcttcgtttctaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38937 ccaacgtgtcatatggggttaaagccaaggtaacaccatttcctgtcttcgtttctaaga 38878
Query: 206 gaattgactttcttgattcgtcagcaattcgtagatccatgggtcttattgttgggaata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38877 gaattgactttcttgattcgtcagcaattcgtagatccatgggtcttattgttgggaata 38818
Query: 266 acaacgtcctaccaatttgaaatagagggtcttgatatgctcccatatctatatttcttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38817 acaacgtcctaccaatttgaaatagagggtcttgatatgctcccatatctatatttcttg 38758
Query: 326 tcaatcgcagaagtaattcatgggtttgttcattggtgtataagggcaaagtctgggtgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38757 tcaatcgcagaagtaattcatgggtttgttcattggtgtataagggcaaagtctgggtgt 38698
Query: 386 taaccttaaatatagccatgttcccattatctaaatgaaacagttcaacgcataaattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38697 taaccttaaatatagccatgttcccattatctaaatgaaacagttcaacgcataaattct 38638
Query: 446 cataacgtaacttgtcacacgttattttgaaatagtctcttttaatgacgctttccaaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38637 cataacgtaacttgtcacacgttattttgaaatagtctcttttaatgacgctttccaaat 38578
Query: 506 tgaacaatggaggagcaacgaaatcatgtgcatgagataacaaatctttcacctggtcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38577 tgaacaatggaggagcaacgaaatcatgtgcatgagataacaaatctttcacctggtcaa 38518
Query: 566 ataacaagctttcacattgcactttattccaattcctcatgaaatgggttctg-aaagac 624
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 38517 ataacaagctttcacattgcactttattccaattcctcatgaaat-ggttctgaaaagac 38459
Query: 625 atcactctttgacctaactctggtgatggttacgttttcgccacagtatacaaatactca 684
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 38458 atcactctttgacctaactctggtgatggtaacgttttcgccacagtatacaaatactca 38399
Query: 685 taagtcttgagcatacatctttaaaaactccatgtttggagccgaaccccacccctagtg 744
||||||||||||||||||| |||||||||||||| ||||||||||| |||| || |||||
Sbjct: 38398 taagtcttgagcatacatc-ttaaaaactccatg-ttggagccgaa-cccaaccgtagtg 38342
Query: 745 ctgaacgattggaac 759
|||||||| ||||||
Sbjct: 38341 ctgaacgactggaac 38327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5579
Number of Sequences: 1807
Number of extensions: 5579
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)