BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC34ZD04RM1.SCF screened BAC_end (878 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig187 888 0.0 >3x_Contig187 Length = 1332 Score = 888 bits (448), Expect = 0.0 Identities = 495/504 (98%), Gaps = 5/504 (0%) Strand = Plus / Plus Query: 49 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ctttatcataaatgacccatcaacacctttatccgccccgactaatagaatattggagcg 648 Query: 109 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 agtattcttcgagaggaagtcacttatttcccagggttgttctttcatgattgtcaagat 708 Query: 169 catttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 catttgtgataatccatctttcgcatctccgacaagtaaaccctccttaaactcagtaaa 768 Query: 229 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 tcgttcggatagttgcggttgcgtcctgagaaggtctatattcgatctgatcattttcca 828 Query: 289 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 ctcttcgactgttcgtgtactttccattgaatacatctggagttccattaaacgtgcggc 888 Query: 349 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 aaaagagagcctatcattctctaaaaacattgggccaaaagcacaaaacattaagcggat 948 Query: 409 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaatt 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 tagtacagacaaaattttattcggtttattgggcttgctgttaacaagttcgtctgaatt 1008 Query: 469 ttc-agtacgtaccgaaatactgtc-aaaactcatttac-tcaacatcat-aaaccaatg 524 ||| ||||||||||||||||||||| |||||||||| || |||||||||| |||||||| Sbjct: 1009 ttcaagtacgtaccgaaatactgtcaaaaactcattcacttcaacatcataaaaccaatt 1068 Query: 525 ctttttgat-cgcacccattctaa 547 |||||| || | |||||||||||| Sbjct: 1069 cttttttatactcacccattctaa 1092 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7608 Number of Sequences: 1807 Number of extensions: 7608 Number of successful extensions: 84 Number of sequences better than 1.0e-20: 1 length of query: 878 length of database: 10,358,551 effective HSP length: 16 effective length of query: 862 effective length of database: 10,329,639 effective search space: 8904148818 effective search space used: 8904148818 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)