BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD05FM1.SCF screened BAC_end
(878 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1697 1516 0.0
>3x_Contig1697
Length = 16220
Score = 1516 bits (765), Expect = 0.0
Identities = 788/795 (99%), Gaps = 1/795 (0%)
Strand = Plus / Minus
Query: 85 aaacagcatagaaactttatcgaaaatcaattgccccgtatcaggtttacaagactcaat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8607 aaacagcatagaaactttatcgaaaatcaattgccccgtatcaggtttacaagactcaat 8548
Query: 145 tcccttaacttttacatcagtcccgtcttaccagcgatcttcgatgacgttaccatttca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8547 tcccttaacttttacatcagtcccgtcttaccagcgatcttcgatgacgttaccatttca 8488
Query: 205 aacaacttaacgaaactaacgatagctggcaacaagaaaatcaatgacgaagagttaatc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8487 aacaacttaacgaaactaacgatagctggcaacaagaaaatcaatgacgaagagttaatc 8428
Query: 265 tcactgattttggggctgccgaatttgatagatttagacctacgtgcatgttctcagatc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8427 tcactgattttggggctgccgaatttgatagatttagacctacgtgcatgttctcagatc 8368
Query: 325 agtgacatttccatcgtttctatcgtaacgcactgtcccaaactacaaagtataaacttg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 agtgacatttccatcgtttctatcgtaacgcactgtcccaaactacaaagtataaacttg 8308
Query: 385 gggcgtcatgaaaactcgcatttgattactgatctttcaatcatggcactatctgagtta 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 gggcgtcatgaaaactcgcatttgattactgatctttcaatcatggcactatctgagtta 8248
Query: 445 gaacatcttactacggtcggtttctcaggatgcgacaagatctctgacgtatcaatatgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8247 gaacatcttactacggtcggtttctcaggatgcgacaagatctctgacgtatcaatatgg 8188
Query: 505 caactgtacagcaaacattcaacaacgctggttcgattgtcaataaatggctgcacacaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8187 caactgtacagcaaacattcaacaacgctggttcgattgtcaataaatggctgcacacaa 8128
Query: 565 atatcagatagtagcattagcgatatcgttgccaagcatggatttccaaatctgaaagtc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8127 atatcagatagtagcattagcgatatcgttgccaagcatggatttccaaatctgaaagtc 8068
Query: 625 ttagatatccggaactgtcaactggttcgtttcaaaaacttaatccaataccgtgactgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8067 ttagatatccggaactgtcaactggttcgtttcaaaaacttaatccaataccgtgactgg 8008
Query: 685 agacacaaatatctgatgaaaccgatacatatccatatcagtgattcgatgaagaaagaa 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8007 agacacaaatatctgatgaaaccgatacatatccatatcagtgattcgatgaagaaagaa 7948
Query: 745 ttcgaattgcaagaacagcagctatacagggaattcagaactcggatcgtncacgatcta 804
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 7947 ttcgaattgcaagaacagcagctatacaaggaattcagaactcggatcgtcaacgatcta 7888
Query: 805 aatagatgggtcaacgaagcgacctgagat-aaaaaatattctgaganaatctcatacgt 863
|||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||
Sbjct: 7887 aatagatgggtcaacgaagcgacctgagataaaaaaataatctgagagactctcatacgt 7828
Query: 864 tataccatcagcagg 878
|||||||||||||||
Sbjct: 7827 tataccatcagcagg 7813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5617
Number of Sequences: 1807
Number of extensions: 5617
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 878
length of database: 10,358,551
effective HSP length: 16
effective length of query: 862
effective length of database: 10,329,639
effective search space: 8904148818
effective search space used: 8904148818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)