BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD05RM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1302 1433 0.0
3x_Contig1399 107 4e-23
>3x_Contig1302
Length = 5215
Score = 1433 bits (723), Expect = 0.0
Identities = 791/806 (98%), Gaps = 7/806 (0%)
Strand = Plus / Plus
Query: 54 acttttgaccctttttaatctccggatttttataaatttgacattgacaatagcttttaa 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acttttgaccctttttaatctccggatttttataaatttgacattgacaatagcttttaa 860
Query: 114 tgattaaaggtctttaaaaaaataacaaaagtgaaagatgaccaaaaacggacagagaac 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tgattaaaggtctttaaaaaaataacaaaagtgaaagatgaccaaaaacggacagagaac 920
Query: 174 agaataatcataaaaccattatatatactatatgcgctccccctacattatacattttcg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agaataatcataaaaccattatatatactatatgcgctccccctacattatacattttcg 980
Query: 234 acattgtcatccgacgttgttactagtagggagaaagatgctgtataataatataaaaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 acattgtcatccgacgttgttactagtagggagaaagatgctgtataataatataaaaaa 1040
Query: 294 gaatgttataacagtagatatagatgttaaaaagatactatgttagttgcaatccagcag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gaatgttataacagtagatatagatgttaaaaagatactatgttagttgcaatccagcag 1100
Query: 354 aactagataaatatcgttaaaaactttcatcaattcatgatatgtgatcattaactaaaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 aactagataaatatcgttaaaaactttcatcaattcatgatatgtgatcattaactaaaa 1160
Query: 414 ggccgaaggaataatatgggataagagattggaaggaaggaaaaaaaaaagataatattt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 ggccgaaggaataatatgggataagagattggaaggaaggaaaaaaaaaagataatattt 1220
Query: 474 ttggcagtaactgtaaattataataacagactgatcttaccccaaatgacttatccgtct 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 ttggcagtaactgtaaattataataacagactgatcttaccccaaatgacttatccgtct 1280
Query: 534 agttggaggtgtcaacaacgtatctacccaaaatcttaccttgttccatcaattcgtaaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 agttggaggtgtcaacaacgtatctacccaaaatcttaccttgttccatcaattcgtaaa 1340
Query: 594 cctttggtagttcggacaaaccaacaaccttgattggagagtggacgtgaccgttagcga 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 cctttggtagttcggacaaaccaacaaccttgattggagagtggacgtgaccgttagcga 1400
Query: 654 agaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacccttgatgttaa 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 agaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacccttgatgttaa 1460
Query: 714 tagactaaacgacgtgggagaagaacttc-gacctgatgacggcaccagctgggcaaccg 772
|||||| |||||||||||||||| ||||| ||| ||||||||||||||||||| |||||
Sbjct: 1461 tagacttaacgacgtgggagaag-acttcggacttgatgacggcaccagctggcaaaccg 1519
Query: 773 accaatacgacagtacccaggttggtctgacgaaattgatgggaaagcgttcatggcagc 832
||||||||||||||||| |||||||||||| |||||| | | ||||||||||||||||
Sbjct: 1520 accaatacgacagtacc--agttggtctgacg-aattga-gtggaagcgttcatggcagc 1575
Query: 833 tttcagaaacagagaagttaatgaca 858
|||||||||||||| ||||||||||
Sbjct: 1576 -ttcagaaacagagacgttaatgaca 1600
>3x_Contig1399
Length = 7157
Score = 107 bits (54), Expect = 4e-23
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 652 gaagaagttgatagcttctctggtgtcagctctgttaccgacgtaagaacccttgatgtt 711
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gaagaagtcggtggcttctctggtgtcagctctgttaccgacgtaagaacccttgatgga 428
Query: 712 aatagactaaacgacgtgggagaaga 737
|| |||| |||||||||||||||||
Sbjct: 427 gatggacttaacgacgtgggagaaga 402
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8663
Number of Sequences: 1807
Number of extensions: 8663
Number of successful extensions: 98
Number of sequences better than 1.0e-20: 2
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)