BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZD06FM1.SCF screened BAC_end
         (933 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig521                                                         1312   0.0  

>3x_Contig521 
          Length = 2327

 Score = 1312 bits (662), Expect = 0.0
 Identities = 671/674 (99%)
 Strand = Plus / Minus

                                                                       
Query: 86  ctaactggagattggtcgaagttggccgtgttgttttggttaaacaaggccaatccgccg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctaactggagattggtcgaagttggccgtgttgttttggttaaacaaggccaatccgccg 615

                                                                       
Query: 146 gcaagttggccactattgttgaaatcattgaccaaaagagagtatgttttacagattata 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gcaagttggccactattgttgaaatcattgaccaaaagagagtatgttttacagattata 555

                                                                       
Query: 206 atgaaacggagattccctgtacagtaccatctttccatttgaaataagaacagatatcga 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atgaaacggagattccctgtacagtaccatctttccatttgaaataagaacagatatcga 495

                                                                       
Query: 266 tcacactgcgatctggtattcttatgctttatttgggaaagttgcatagatgtataggat 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcacactgcgatctggtattcttatgctttatttgggaaagttgcatagatgtataggat 435

                                                                       
Query: 326 cgaaccgaagaataatatgaggaagaggaaagaatgattcatgataaactgtttcccgag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgaaccgaagaataatatgaggaagaggaaagaatgattcatgataaactgtttcccgag 375

                                                                       
Query: 386 ttaaagaaagtatactttgagaaatgaatgaaaaactattgtactgaacagacatcgaga 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttaaagaaagtatactttgagaaatgaatgaaaaactattgtactgaacagacatcgaga 315

                                                                       
Query: 446 gagaggtttagactacgtttgttttccctccttctggtaaggttaggaatgtgtcgttaa 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagaggtttagactacgtttgttttccctccttctggtaaggttaggaatgtgtcgttaa 255

                                                                       
Query: 506 tactcgatggctctcgtacttggtatgaacatgacagtccttttcctagttatttttttg 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tactcgatggctctcgtacttggtatgaacatgacagtccttttcctagttatttttttg 195

                                                                       
Query: 566 tttctatccataaactcgtatcgaacaatttttactaacaaaatatccatgacattaact 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tttctatccataaactcgtatcgaacaatttttactaacaaaatatccatgacattaact 135

                                                                       
Query: 626 tgtctaattttaatttccttccaggctttgattgatggtccaaccactggtgtcccaaga 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgtctaattttaatttccttccaggctttgattgatggtccaaccactggtgtcccaaga 75

                                                                       
Query: 686 caagctatcaactttagtcaagtcgttttgactccattgacctttgctgttccaagaagt 745
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 74  caagctatcaacttaggtcaagtcgttttgactccattgacctttgctgttccaagaggt 15

                         
Query: 746 gctaagtctgctac 759
           ||||||||||||||
Sbjct: 14  gctaagtctgctac 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7634
Number of Sequences: 1807
Number of extensions: 7634
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)