BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig598 1515 0.0
>3x_Contig598
Length = 2989
Score = 1515 bits (764), Expect = 0.0
Identities = 849/866 (98%), Gaps = 9/866 (1%)
Strand = Plus / Minus
Query: 41 aagcttcgattaagtctattcaaacggatttctggcaaaaatacggtcgtactttcttta 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 aagcttcgattaagtctattcaaacggatttctggcaaaaatacggtcgtactttcttta 1730
Query: 101 ctcgttacgattttgagaacttatcgagcgaagacgctggtaaggtcattttgctgttgc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 ctcgttacgattttgagaacttatcgagcgaagacgctggtaaggtcattttgctgttgc 1670
Query: 161 aaaactacgtcgctgaccctgaatctataaagggtaccaaattcccagctgatgattctt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1669 aaaactacgtcgctgaccctgaatctataaagggtaccaaattcccagctgatgattctt 1610
Query: 221 tgacagtggtagaaggtggtgacttctcttacacagatctagatgggtcagtttcaagcc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1609 tgacagtggtagaaggtggtgacttctcttacacagatctagatgggtcagtttcaagcc 1550
Query: 281 atcaaggtttatacgtcagattatctaatggtgttcgtttcgttgtaagactctcaggta 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1549 atcaaggtttatacgtcagattatctaatggtgttcgtttcgttgtaagactctcaggta 1490
Query: 341 caggttcttccggtgccactatcagattatacgtggaacgttacactaatgacggatcaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1489 caggttcttccggtgccactatcagattatacgtggaacgttacactaatgacggatcaa 1430
Query: 401 aatacgaacagaccgctgaagaattcttgggtaaagatatcaagaccatcttgaaattct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 aatacgaacagaccgctgaagaattcttgggtaaagatatcaagaccatcttgaaattct 1370
Query: 461 tgaagtttaaggaagcaatcggtactgaagaaccaactgtccgtacctgaatagcctcac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 tgaagtttaaggaagcaatcggtactgaagaaccaactgtccgtacctgaatagcctcac 1310
Query: 521 ctcccaattattatatgctaaaaaactgtaattgacatttatctacctttcagacacgat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 ctcccaattattatatgctaaaaaactgtaattgacatttatctacctttcagacacgat 1250
Query: 581 agtagtcacattgccttatgatatcatacatatatatctatacataatatcagtgctaac 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 agtagtcacattgccttatgatatcatacatatatatctatacataatatcagtgctaac 1190
Query: 641 atacatactatatattaatgaacccacgt-atatgcatcatttacttctatgatatgaga 699
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 1189 atacatactatatattaatgaa-ccacgtaatatgcatcatttacttctatgatatgaga 1131
Query: 700 acacantagtctggatgtaacctncatatcattttccggtactttgttacgctcccatta 759
||||| ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 1130 acacaatagtctggatgtaacctcaatatca-tttccggtactttgttacgct-ccatta 1073
Query: 760 gattatatttcgggcaatattcaccgtttttgctccccccttgtctcgagcttcgccctg 819
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct: 1072 gattatatttcgggcaatattcacggtttttgctccccctttgtctcgagcttcgccttg 1013
Query: 820 tttgcgaagtttctggggattaaggcttaatttttagaaacctcg-taagttaaaacatt 878
|||||||||||||| |||||||| |||||| ||||||||| |||| |||||| |||||||
Sbjct: 1012 tttgcgaagtttct-gggattaaagcttaaattttagaaa-ctcgttaagtt-aaacatt 956
Query: 879 ccgccaaaacctttaaaaacaacagc 904
||| ||||||||||||||||||||||
Sbjct: 955 ccg-caaaacctttaaaaacaacagc 931
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6254
Number of Sequences: 1807
Number of extensions: 6254
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)