BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD07FM1.SCF screened BAC_end
(863 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1459 0.0
>3x_Contig1610
Length = 13981
Score = 1459 bits (736), Expect = 0.0
Identities = 758/766 (98%)
Strand = Plus / Minus
Query: 87 caagcaatgcgctaacaagaactggataataattgtatatcggagaagaaggggtatcag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5196 caagcaatgcgctaacaagaactggataataattgtatatcggagaagaaggggtatcag 5137
Query: 147 ctaattgttcgacaaggttgataatcgtccaagaacaattggtagccacttttggatggt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5136 ctaattgttcgacaaggttgataatcgtccaagaacaattggtagccacttttggatggt 5077
Query: 207 cttttaacccgatcaaacaagcgtttacaacatcagaaagatggtcttgaggatctatag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5076 cttttaacccgatcaaacaagcgtttacaacatcagaaagatggtcttgaggatctatag 5017
Query: 267 cagcaacgactgagtctgcaattctgccgatgcaccatgctactgtttccttcacttgca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5016 cagcaacgactgagtctgcaattctgccgatgcaccatgctactgtttccttcacttgca 4957
Query: 327 aaactggatccgttattaggttgaggataggtggtaacgcttgatggactaaactagtca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4956 aaactggatccgttattaggttgaggataggtggtaacgcttgatggactaaactagtca 4897
Query: 387 attgagttttgtcaggaccgtccaatatagaaccaaaagccatcacagccgcttcgcgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4896 attgagttttgtcaggaccgtccaatatagaaccaaaagccatcacagccgcttcgcgtt 4837
Query: 447 gtctccaattgtcactggtgatgttctgttcaacgaagtgcaagacaggttctactacgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4836 gtctccaattgtcactggtgatgttctgttcaacgaagtgcaagacaggttctactacgt 4777
Query: 507 agttaccacagttttgagcgaatagttgcaaacaagcaccagcagacattgccacgttcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4776 agttaccacagttttgagcgaatagttgcaaacaagcaccagcagacattgccacgttcc 4717
Query: 567 aatcatcatcatccggatcttcattttgctttgttaaaagctgtaatagagttggcacca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4716 aatcatcatcatccggatcttcattttgctttgttaaaagctgtaatagagttggcacca 4657
Query: 627 cttcttggatggatactagagcaaaattgtaagattccaagcctgggttggagtactgtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4656 cttcttggatggatactagagcaaaattgtaagattccaagcctgggttggagtactgtg 4597
Query: 687 acagttcanaagcaatatcaatttcttcttcacagatggtagaccaaaattcaacggcca 746
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4596 acagttcaaaagcaatatcaatttcttcttcacagatggtagaccaaaattcaacggcca 4537
Query: 747 ttgctgccaccttttcattggatgattgtatagtagccacggtcaaagcgaatagagctt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4536 ttgctgccaccttttcattggatgattgtatagtagccacggtcaaagcgaatagagctt 4477
Query: 807 gtttcatgtaaagtttcatgtanaaaatatatattgacatgatttt 852
||| ||||||| |||||||||| ||| |||| ||||||||||||
Sbjct: 4476 gttccatgtaaggtttcatgtagaaatagtatagtgacatgatttt 4431
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5691
Number of Sequences: 1807
Number of extensions: 5691
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 863
length of database: 10,358,551
effective HSP length: 16
effective length of query: 847
effective length of database: 10,329,639
effective search space: 8749204233
effective search space used: 8749204233
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)