BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZD07RM1.SCF screened BAC_end
         (864 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1085                                                        1138   0.0  

>3x_Contig1085 
          Length = 5008

 Score = 1138 bits (574), Expect = 0.0
 Identities = 583/586 (99%)
 Strand = Plus / Minus

                                                                       
Query: 48  ttgcaatcacgaccttaaatattttctgtacgttgattgatgattgggtcgagcaaaata 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttgcaatcacgaccttaaatattttctgtacgttgattgatgattgggtcgagcaaaata 529

                                                                       
Query: 108 tcagaggcgatttcataacttgagcgtatttcatcgcagttctagatacattttcttgat 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tcagaggcgatttcataacttgagcgtatttcatcgcagttctagatacattttcttgat 469

                                                                       
Query: 168 attcggggtccatatcgacgaaaaggtcatatttagttccaaccagaattgaaattgctg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attcggggtccatatcgacgaaaaggtcatatttagttccaaccagaattgaaattgctg 409

                                                                       
Query: 228 tatcattgaacccccttgcttgtctgtaccattcttttatcgaatttaaagtctctggcc 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatcattgaacccccttgcttgtctgtaccattcttttatcgaatttaaagtctctggcc 349

                                                                       
Query: 288 gcgtcaaatcgaaaagaaatactattgcaactgcaccttcggatactaaagggagcatat 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gcgtcaaatcgaaaagaaatactattgcaactgcaccttcggatactaaagggagcatat 289

                                                                       
Query: 348 tgataaattcacgttgacctccaagatccattatggagaatataacgtctgtggatccca 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgataaattcacgttgacctccaagatccattatggagaatataacgtctgtggatccca 229

                                                                       
Query: 408 gcaccactttccgctcgaggtaatgcacccccaatgtctgcgtatattcctcatcaaaca 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gcaccactttccgctcgaggtaatgcacccccaatgtctgcgtatattcctcatcaaaca 169

                                                                       
Query: 468 cattttgtacgtatttgaccattaaagaagtctttccaacttgtgcatcacctatcaggc 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cattttgtacgtatttgaccattaaagaagtctttccaacttgtgcatcacctatcaggc 109

                                                                       
Query: 528 caactttcaccttgacctggtgtctaaagctcggtactcgatctttattcagagacattg 587
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 108 caactttcaccttgacctggtgtctaaggctcggtactcgatctttatccagagacattg 49

                                                         
Query: 588 caacgaaaaaaaaaagagtgttatctgtagacttggctcactgctc 633
           ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 48  caacgaaaaaaaaaagagtgttatctgtagacttgtctcactgctc 3


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6899
Number of Sequences: 1807
Number of extensions: 6899
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 864
length of database: 10,358,551
effective HSP length: 16
effective length of query: 848
effective length of database: 10,329,639
effective search space: 8759533872
effective search space used: 8759533872
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)