BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD08FM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 1291 0.0
>3x_Contig1741
Length = 21706
Score = 1291 bits (651), Expect = 0.0
Identities = 691/702 (98%), Gaps = 2/702 (0%)
Strand = Plus / Plus
Query: 86 caagatataagggttggccctgataaatcacttacataccaaaagaggcaccaataacaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19920 caagatataagggttggccctgataaatcacttacataccaaaagaggcaccaataacaa 19979
Query: 146 gccaataagatccaaagatcaccaccactgactgcagattgaccgttttgactataaggt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19980 gccaataagatccaaagatcaccaccactgactgcagattgaccgttttgactataaggt 20039
Query: 206 ttttttacggcttcgaaatgaggctattttgacctgttttacgtacttaacctgtgtgcc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20040 ttttttacggcttcgaaatgaggctattttgacctgttttacgtacttaacctgtgtgcc 20099
Query: 266 ctcatttgctttaacatgtatattgttacccgcactgaaactccttgctcacccgctttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20100 ctcatttgctttaacatgtatattgttacccgcactgaaactccttgctcacccgctttc 20159
Query: 326 catacacaaccgtagagaattgctcacttttttttgagtgaaaaattaccaccaaacata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20160 catacacaaccgtagagaattgctcacttttttttgagtgaaaaattaccaccaaacata 20219
Query: 386 atatttgcaaaaaaaaaccttggtaaggatttggtacaaattaaatatggatgctttctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20220 atatttgcaaaaaaaaaccttggtaaggatttggtacaaattaaatatggatgctttctt 20279
Query: 446 cctaacactttgattttttgaagagaattccaaaatcatatatatattcactggttctaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20280 cctaacactttgattttttgaagagaattccaaaatcatatatatattcactggttctaa 20339
Query: 506 tttagtttattcttgttgcagttgtatttatgtaatttgttatatatattctcttttgat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20340 tttagtttattcttgttgcagttgtatttatgtaatttgttatatatattctcttttgat 20399
Query: 566 tctcagaaa-tcaagaacttagaaacctatttcatcaccgaaatgcgtgctaagtggaga 624
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20400 tctcagaaagtcaagaacttagaaacctatttcatcaccgaaatgcgtgctaagtggaga 20459
Query: 625 aagaagagagttagaagacttaagag-aagagacggnaggtgagagctagatccaaataa 683
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 20460 aagaagagagttagaagacttaagagaaagagacggaaggtgagagctagatccaaataa 20519
Query: 684 gcggactgaatcaataaactagggaaagaacttttctcattacaagattattgcaaaaat 743
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct: 20520 gcggactgaatcaataaactagggaaagaacttttctcattacgagataattgcaaagat 20579
Query: 744 ttatttgcgcatgggcgattgcattggacaatgctcttatgc 785
||| ||||||| ||||| ||||||| |||||||||||||||
Sbjct: 20580 ttagttgcgcaatggcgagtgcattgaacaatgctcttatgc 20621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7633
Number of Sequences: 1807
Number of extensions: 7633
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)