BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZD08RM1.SCF screened BAC_end
         (895 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1710                                                        1092   0.0  

>3x_Contig1710 
          Length = 16151

 Score = 1092 bits (551), Expect = 0.0
 Identities = 628/643 (97%), Gaps = 8/643 (1%)
 Strand = Plus / Minus

                                                                        
Query: 46   catgtcgtctcaagtgccttatcattttgaaacaaccaagtaggtatgaatatgaaataa 105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 catgtcgtctcaagtgccttatcattttgaaacaaccaagtaggtatgaatatgaaataa 948

                                                                        
Query: 106  attattaggaaaccagtacccaattgatgtcccacatcgatataatcgatacataatctt 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  attattaggaaaccagtacccaattgatgtcccacatcgatataatcgatacataatctt 888

                                                                        
Query: 166  atatccgtctgatcttcatcctggatcggttataccaagcacgaattcattacgtcagca 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  atatccgtctgatcttcatcctggatcggttataccaagcacgaattcattacgtcagca 828

                                                                        
Query: 226  tacatgctccagtaccacattgtattggcacagacgcaaattacttattctttgcaaaaa 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tacatgctccagtaccacattgtattggcacagacgcaaattacttattctttgcaaaaa 768

                                                                        
Query: 286  cgatataaaagcgatgcatgattccgaggagatacacagtacgaaataaacccagggtat 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  cgatataaaagcgatgcatgattccgaggagatacacagtacgaaataaacccagggtat 708

                                                                        
Query: 346  taaattcgatattcgcttttgacacgtcgcattccttccaatgtggcactctaacatgtc 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  taaattcgatattcgcttttgacacgtcgcattccttccaatgtggcactctaacatgtc 648

                                                                        
Query: 406  ttaatcctcctctttcttctgggatcttactgccgttctctttttttttttttttttttt 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  ttaatcctcctctttcttctgggatcttactgccgttctctttttttttttttttttttt 588

                                                                        
Query: 466  gcctgtttggaaaag-aaaagtgaaagctagaatttgattgtcatcttt-gaaattgccg 523
            ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 587  gcctgtttggaaaagaaaaagtgaaagctagaatttgattgtcatctttggaaattgccg 528

                                                                        
Query: 524  tttgaaat-gaacaatggataagcgtacggggcgtctc-agggcacagtgcctcgcagag 581
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 527  tttgaaatggaacaatggataagcgtacggggcgtctcaagggcacagtgcctcgcagag 468

                                                                        
Query: 582  gcg-cagtatttcatacgataagtaggcaatgttttctggattatttttagaacatcggg 640
            ||| ||||||| ||||||||| ||| ||||||||||||| |||| |||||| |||||| |
Sbjct: 467  gcgccagtattccatacgataggta-gcaatgttttctgtatta-ttttagtacatcgtg 410

                                                       
Query: 641  catactgattatacaatgcctggctttttttttcttacttttg 683
            ||||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 409  catactgataatacaatgcat-gctttttttttcttacttttg 368


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,228
Number of Sequences: 1807
Number of extensions: 22228
Number of successful extensions: 4070
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)