BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC34ZD09RM1.SCF screened BAC_end (890 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1404 1043 0.0 >3x_Contig1404 Length = 8096 Score = 1043 bits (526), Expect = 0.0 Identities = 618/635 (97%), Gaps = 14/635 (2%) Strand = Plus / Plus Query: 43 gcttcttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgtt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5477 gcttcttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgtt 5536 Query: 103 caagtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattc 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5537 caagtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattc 5596 Query: 163 tatccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgca 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5597 tatccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgca 5656 Query: 223 aatgttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttct 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5657 aatgttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttct 5716 Query: 283 cgttcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcag 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5717 cgttcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcag 5776 Query: 343 cgacccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5777 cgacccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagac 5836 Query: 403 gatctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctat 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5837 gatctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctat 5896 Query: 463 aattagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatatt 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5897 aattagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatatt 5956 Query: 523 gacttgccgtagtagcttttgatctca-taagccacttt-gggaga--aaacccctcctg 578 ||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||||| Sbjct: 5957 gacttgccgtagtagcttttgatctcattaagccactttggggagaagaaccccctcctg 6016 Query: 579 acattgtaccg--aatatcgatt-atttccattc--acgtga-cactctgaacc-tcttt 631 ||||||||||| |||||||||| |||||| || |||||| ||||||||||| ||||| Sbjct: 6017 acattgtaccggaaatatcgattaatttcccatccaacgtgaccactctgaaccttcttt 6076 Query: 632 t-ccgta-gctactcga-tagcttgctgtaaatcc 663 | ||||| ||||||||| ||||||||||||||||| Sbjct: 6077 tcccgtaggctactcgattagcttgctgtaaatcc 6111 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7049 Number of Sequences: 1807 Number of extensions: 7049 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 890 length of database: 10,358,551 effective HSP length: 16 effective length of query: 874 effective length of database: 10,329,639 effective search space: 9028104486 effective search space used: 9028104486 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)