BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZD09RM1.SCF screened BAC_end
         (890 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1404                                                        1043   0.0  

>3x_Contig1404 
          Length = 8096

 Score = 1043 bits (526), Expect = 0.0
 Identities = 618/635 (97%), Gaps = 14/635 (2%)
 Strand = Plus / Plus

                                                                        
Query: 43   gcttcttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgtt 102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5477 gcttcttacttctggtcttctcctttttctgcttttcatgtaaaatttcaatgtgttgtt 5536

                                                                        
Query: 103  caagtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattc 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5537 caagtgaggcaacttttgcgatttgcatcttgagctcaattcctcctttctgcatgattc 5596

                                                                        
Query: 163  tatccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgca 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5597 tatccttgagatcatcaatcttatcttggctaaactttgaagcatcaattgtttgctgca 5656

                                                                        
Query: 223  aatgttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttct 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5657 aatgttgtctcaaaatatctagtttcttctcttcatccaacagtggctgttgattcttct 5716

                                                                        
Query: 283  cgttcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcag 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5717 cgttcatagaaagttccctagcaagctgtgatagtcgttggtgataggattccacctcag 5776

                                                                        
Query: 343  cgacccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagac 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 cgacccgagatcctttctcaagttgtattttggaaatctgaatatcaatctccggaagac 5836

                                                                        
Query: 403  gatctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctat 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5837 gatctgttaacttttgtaatgcagattccatctcatggaccatcgatagagctgacctat 5896

                                                                        
Query: 463  aattagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatatt 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5897 aattagtttctttggttgaaagttgtacttccattttctccacttcatcgcgagaatatt 5956

                                                                        
Query: 523  gacttgccgtagtagcttttgatctca-taagccacttt-gggaga--aaacccctcctg 578
            ||||||||||||||||||||||||||| ||||||||||| ||||||  || |||||||||
Sbjct: 5957 gacttgccgtagtagcttttgatctcattaagccactttggggagaagaaccccctcctg 6016

                                                                        
Query: 579  acattgtaccg--aatatcgatt-atttccattc--acgtga-cactctgaacc-tcttt 631
            |||||||||||  |||||||||| ||||||  ||  |||||| ||||||||||| |||||
Sbjct: 6017 acattgtaccggaaatatcgattaatttcccatccaacgtgaccactctgaaccttcttt 6076

                                               
Query: 632  t-ccgta-gctactcga-tagcttgctgtaaatcc 663
            | ||||| ||||||||| |||||||||||||||||
Sbjct: 6077 tcccgtaggctactcgattagcttgctgtaaatcc 6111


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7049
Number of Sequences: 1807
Number of extensions: 7049
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)