BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD11FM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1735 1308 0.0
>3x_Contig1735
Length = 19486
Score = 1308 bits (660), Expect = 0.0
Identities = 696/703 (99%), Gaps = 4/703 (0%)
Strand = Plus / Minus
Query: 87 agataatctggcttctgtgtatatatagttacgtaacgagcttctaatggaattatcgac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18466 agataatctggcttctgtgtatatatagttacgtaacgagcttctaatggaattatcgac 18407
Query: 147 aggttcgatcggtcccaaaacaatagacaggacagcgttgttccatgaatacaactagga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18406 aggttcgatcggtcccaaaacaatagacaggacagcgttgttccatgaatacaactagga 18347
Query: 207 tgcgtacattcctcttcgattgcttcgtttttaagatcagtatttgcattttgtttctaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18346 tgcgtacattcctcttcgattgcttcgtttttaagatcagtatttgcattttgtttctaa 18287
Query: 267 acataatgcatatatcatgggatttggtaatacagtgcgtttcggtagaatttaccccag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18286 acataatgcatatatcatgggatttggtaatacagtgcgtttcggtagaatttaccccag 18227
Query: 327 tgaatccattttgcgcagttttcgtcaaaccttttcgccagaagttcgtaatcagtaccg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18226 tgaatccattttgcgcagttttcgtcaaaccttttcgccagaagttcgtaatcagtaccg 18167
Query: 387 taattgccataaaactcaataaagaagcaatattgccattttctttctgattgcacttga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18166 taattgccataaaactcaataaagaagcaatattgccattttctttctgattgcacttga 18107
Query: 447 ttatggaatggtctcgaactgattgagcacatattcaacttatactccctcaagacattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18106 ttatggaatggtctcgaactgattgagcacatattcaacttatactccctcaagacattt 18047
Query: 507 aatacatctattaaggaacctggatcatcttgatttatcacgaaggtgacaaagtttact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18046 aatacatctattaaggaacctggatcatcttgatttatcacgaaggtgacaaagtttact 17987
Query: 567 ttcatttcatcgcctttaggtgggagagcttggctgccaatttcgctagattcgtcacgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17986 ttcatttcatcgcctttaggtgggagagcttggctgccaatttcgctagattcgtcacgc 17927
Query: 627 cttttcaagatcaagaaccttgtcgtatttccattgacatcattgataccgncttccaca 686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 17926 cttttcaagatcaagaaccttgtcgtatttccattgacatcattgataccgccttccaca 17867
Query: 687 atcgtagcttttatttagtgatgcactcgcacggcttcccattgctagagttattttttc 746
|||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 17866 atcgtagc-tttatttagtgatgcactcgcacggcttccaattgctagagtta-tttttc 17809
Query: 747 tatcagtgggcatatttcagctatgcatctttccacaggcccc 789
||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 17808 tatcagt-ggcata-ttcagctatgcatctttccacagccccc 17768
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5870
Number of Sequences: 1807
Number of extensions: 5870
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)