BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD11RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1362 0.0
>3x_Contig1749
Length = 22923
Score = 1362 bits (687), Expect = 0.0
Identities = 736/751 (98%), Gaps = 1/751 (0%)
Strand = Plus / Plus
Query: 51 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21231 cgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatcaaat 21290
Query: 111 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21291 gcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgttcc 21350
Query: 171 atgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagcttt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21351 atgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagcttt 21410
Query: 231 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21411 acaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtctccg 21470
Query: 291 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21471 atgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaagtag 21530
Query: 351 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21531 cggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgcacg 21590
Query: 411 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21591 taagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatcctttgtc 21650
Query: 471 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21651 attgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaaggca 21710
Query: 531 tcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaatacatta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21711 tcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaatacatta 21770
Query: 591 tcgctggcatggtctatatcttcgtcattcgtagaatttgttagctcaacagtgtccgtc 650
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 21771 tcgctggcatggtctatatcttcgtcattcgtagaattgtttagctcaacagtgtccgtc 21830
Query: 651 gatgtactagtttttcttaaagtagacggcagtgccggttcaaaatatccattctttgtc 710
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 21831 gatgtactagtttttcttaaagtagacggcagtgccggtccaaataatccattctttgtc 21890
Query: 711 attgacgctaatagactagatcctgcagtccctttgtgcctcattacggcaggattggct 770
|| |||||||||||||||||||||||||| || ||||||||||| ||||||||| | |||
Sbjct: 21891 atcgacgctaatagactagatcctgcagtaccattgtgcctcataacggcaggagttgct 21950
Query: 771 aaatgggattcatttttttatcttctgcact 801
||||||||| || | | ||||||||||||||
Sbjct: 21951 aaatgggataca-tctcttatcttctgcact 21980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6704
Number of Sequences: 1807
Number of extensions: 6704
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)