BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZD12RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig809 1072 0.0
3x_Contig161 317 2e-86
>3x_Contig809
Length = 3151
Score = 1072 bits (541), Expect = 0.0
Identities = 547/549 (99%)
Strand = Plus / Plus
Query: 50 tcccacttaccattatattcaagcaaatgctacaaagttcagtcagaactgatgatttag 109
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2603 tcccacttaccattagattcaagcaaatgctacaaagttcagtcagaactgatgatttag 2662
Query: 110 acgtacgctgggtgagtagtatgtcatggtatatcatttcaatgggtggtttgacaccag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 acgtacgctgggtgagtagtatgtcatggtatatcatttcaatgggtggtttgacaccag 2722
Query: 170 tttataacgttctattcggtggtaatagactcagtaaattaaatgtgtcggctcaacaac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2723 tttataacgttctattcggtggtaatagactcagtaaattaaatgtgtcggctcaacaac 2782
Query: 230 agcaattaagtcaaagtcccggtggaccaaatcctaaggaccaaatgaaggcattggcaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2783 agcaattaagtcaaagtcccggtggaccaaatcctaaggaccaaatgaaggcattggcaa 2842
Query: 290 acgatatcacggttttccaacacatttctgtcctggacaatattgaggatagagtgctca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 acgatatcacggttttccaacacatttctgtcctggacaatattgaggatagagtgctca 2902
Query: 350 aattatactcgtgatcaaaacatatatgtaagagtatttaagtatacagcaatgatatta 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2903 aattatactcgtgatcaaaacatatatgtaagagtatttaagtatacagcaatgatatta 2962
Query: 410 tatcctattacgagaaggctttatacctcgtcatgcttcccttgtttagctttctcctcc 469
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2963 tatcctattacgagaaggctttagacctcgtcatgcttcccttgtttagctttctcctcc 3022
Query: 470 tctttgctcatatcatctcaatagcgaataaaagaaataaatcttaatttaaagcttttg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3023 tctttgctcatatcatctcaatagcgaataaaagaaataaatcttaatttaaagcttttg 3082
Query: 530 tcatctcatcgaatgagtggtaaagatagagaatacaagagcaagggatcagggttcaga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3083 tcatctcatcgaatgagtggtaaagatagagaatacaagagcaagggatcagggttcaga 3142
Query: 590 actaccaag 598
|||||||||
Sbjct: 3143 actaccaag 3151
>3x_Contig161
Length = 858
Score = 317 bits (160), Expect = 2e-86
Identities = 219/231 (94%), Gaps = 6/231 (2%)
Strand = Plus / Minus
Query: 580 agggttcagaactaccaagtactgtagatctgaangaactcgagttgattattaactaca 639
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 858 agggttcagaactaccaagtactgtagatctgaaggaactcgagttgattataaactaca 799
Query: 640 aat-caaacaggaagttacgcgatgcctttg-aaacgattatctgtattggtatggctgg 697
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 798 aatacaaacaggaagttacgcgatgcctttgaaaacgattatctgtattggtatggctgg 739
Query: 698 tgccgggaaaacccactttcatgc-aagattgaactcccatcttcttgcagcttaagaac 756
||||||||||| |||||||||||| |||||||||||||||||||| ||||||| | || |
Sbjct: 738 tgccgggaaaa-ccactttcatgcaaagattgaactcccatcttcatgcagctaaggagc 680
Query: 757 caccatatgttgattaatttggatccagcggtgttgaatgtttccatacgg 807
||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 caccatatg-tgattaatttggatccagcggtgttgaatg-ttccatacgg 631
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6830
Number of Sequences: 1807
Number of extensions: 6830
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)