BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE01FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1219 0.0
>3x_Contig1425
Length = 7919
Score = 1219 bits (615), Expect = 0.0
Identities = 713/734 (97%), Gaps = 10/734 (1%)
Strand = Plus / Minus
Query: 92 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7342 catttgcgttggggaattgattgttgagtttgtcggaaatttggtattttccggtatatc 7283
Query: 152 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7282 ctgtaagtgactgttagatggtggtggtgaatctgcagtaggcatttcaaatcctgcctt 7223
Query: 212 agaatctgcttgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 271
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7222 agaatctgcatgtgagatgtgattaaatccaaatgggacagaaatttttaacttaggagg 7163
Query: 272 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7162 ttcttctttacttgatttattttgaaacagttttaagaggctgttcttcttcttcttgaa 7103
Query: 332 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7102 agatttctttccagattgtttatcatacgcatttggcggcaatggaggaagattaatgtt 7043
Query: 392 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7042 tttcctattacttaagacaggtttatcactattgatcattacaacgcccaattcatcatc 6983
Query: 452 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982 atcgtcagaatccagaagctggtgagcttgtaaaccatataatttttctgtttcatcgtc 6923
Query: 512 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6922 ttcatcgagccagatcgacttgatctgaggtacgttcatcataagtattggcccagatct 6863
Query: 572 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6862 gttggttgttttattcggcaatgcctggtttctgatgattcaaatcatggcctttgtacc 6803
Query: 632 ctggatcatgtttatccgtttatatatacatatatcgggcgcgtccacagtggtaaatgt 691
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 6802 ctggatcatgtttatccgtttatatatacatatatcggccgcgtccacagtggt-aatgt 6744
Query: 692 ttcatgcattcctaaggttcacaatttttctgacattttttcgcatttattggttaactt 751
|||||||||||||| | ||||||| |||||||||| |||||||||| || |||||||| |
Sbjct: 6743 ttcatgcattcctaggtttcacaa-ttttctgaca-tttttcgcatcta-tggttaac-t 6688
Query: 752 cctactggattcaatttaatttaggaaatttctattttaaggtaaaaacacgaatttttt 811
||||||||||| | |||||||||| |||| |||| || |||||||||||||| |||||
Sbjct: 6687 actactggattc-agttaatttagg-aattcctatatt-aggtaaaaacacga--ttttt 6633
Query: 812 atttttcgcaccct 825
||||||||||||
Sbjct: 6632 cattttcgcaccct 6619
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,572
Number of Sequences: 1807
Number of extensions: 15572
Number of successful extensions: 326
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)