BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE01RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1053 0.0
>3x_Contig1425
Length = 7919
Score = 1053 bits (531), Expect = 0.0
Identities = 609/627 (97%), Gaps = 6/627 (0%)
Strand = Plus / Plus
Query: 134 tgtatcaactctgtcacttcaattatagactgcatgaatggagaattagccaattgttca 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtatcaactctgtcacttcaattatagactgcatgaatggagaattagccaattgttca 60
Query: 194 gaaccaatcttcacttcgatcatcgaagaggctcttcatgtattccaaatcgcatataaa 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaaccaatcttcacttcgatcatcgaagaggctcttcatgtattccaaatcgcatataaa 120
Query: 254 ccgttattcgattatccagagaccttcagaaatactgaaagtgggaatctaccagaacta 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccgttattcgattatccagagaccttcagaaatactgaaagtgggaatctaccagaacta 180
Query: 314 gacgtcactggcagattgaatttagaaagaacactgaaaaataccatttatatgggatgt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gacgtcactggcagattgaatttagaaagaacactgaaaaataccatttatatgggatgt 240
Query: 374 atagtgaatggaagtaactcatcttcaatgagacaggacgtcctacatttaagagaaaca 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atagtgaatggaagtaactcatcttcaatgagacaggacgtcctacatttaagagaaaca 300
Query: 434 gaaattgattttattaacggctacatcgtgacgttgtgcaaaaaattctcactaccagaa 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaattgattttattaacggctacatcgtgacgttgtgcaaaaaattctcactaccagaa 360
Query: 494 tctgacgctaaagtcaacataaccatacagcaacttgtgaaattgagattgaaattgaac 553
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tctgacgctaaagtcaacaaaaccatacagcaacttgtgaaattgagattgaaattgaac 420
Query: 554 acgtcgagaaatatatagacattaagaaaatgtgtatcatatatatcatatagtggtaaa 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 421 acgtcgagaaatatatagacattaagaaaatgtgtatcatatatatcatatagt-gtaaa 479
Query: 614 aat-aaccctcatgaactgatcacttt-cctttcttgcgctctcagtaatttgacatctt 671
||| |||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 480 aataaaccttcatgagctgatcactttccctttcttgcgctctcagtattttgacatctt 539
Query: 672 tatttgacaat-aattccttttccttttgacatttaatacccccggacagttaccttttg 730
||||||||||| ||||| ||||| |||| ||||||| || ||||||||||||||| ||||
Sbjct: 540 tatttgacaataaattctttttcttttttacatttatta-ccccggacagttaccatttg 598
Query: 731 gaggggaattttcaatttgaaaaaccc 757
||| | || |||||| |||||||||||
Sbjct: 599 gagtgtaaatttcaa-ttgaaaaaccc 624
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9830
Number of Sequences: 1807
Number of extensions: 9830
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)