BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC34ZE02FM1.SCF screened BAC_end
         (926 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1529                                                        1505   0.0  

>3x_Contig1529 
          Length = 11812

 Score = 1505 bits (759), Expect = 0.0
 Identities = 782/787 (99%), Gaps = 2/787 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattagca 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 tgtaagaaacctcttgtgacatcgagtaaacggttcttattgtcgtccaatccattagca 1947

                                                                        
Query: 147  tccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaactca 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 tccgagtaccttagttggtcaatccatcgtgtaagtcgtttattcacatcttttaactca 1887

                                                                        
Query: 207  tcctctgatttattcactaaattaccgtaggtgaaccatgttagctcttttccgtttcga 266
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1886 tcctctgatttattcactaaattaccgtag-tgaaccatgttagctcttttccgtttcga 1828

                                                                        
Query: 267  atattcatgggaagttaatagttcatatctttcaggtgtcatacacagggctcaacgtat 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 atattcatgggaagttaatagttcatatctttcaggtgtcatacacagggctcaacgtat 1768

                                                                        
Query: 327  aacaagaagctctattgctcctgccacttctttgttgaagtgcatcttgaatggaggttt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aacaagaagctctattgctcctgccacttctttgttgaagtgcatcttgaatggaggttt 1708

                                                                        
Query: 387  gactattgaactatcttgtcttggccaaaaaactggaaattttggcgattttgcagacct 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 gactattgaactatcttgtcttggccaaaaaactggaaattttggcgattttgcagacct 1648

                                                                        
Query: 447  tttctttgcaattcagtgtaagaaattgctaccttggtctggtattgatggtttcacaat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 tttctttgcaattcagtgtaagaaattgctaccttggtctggtattgatggtttcacaat 1588

                                                                        
Query: 507  cacctaagggtagtacacggcatgaatagtaatggtaacgatttgaaagaagagtcttta 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 cacctaagggtagtacacggcatgaatagtaatggtaacgatttgaaagaagagtcttta 1528

                                                                        
Query: 567  gatcctgccaaatatttggcggaaacttttaagaaggagggtcatttagacagtttaaag 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 gatcctgccaaatatttggcggaaacttttaagaaggagggtcatttagacagtttaaag 1468

                                                                        
Query: 627  aatgaaatactatctcaaaatgtagagggtgatattagcttggacgaattcataaagagc 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 aatgaaatactatctcaaaatgtagagggtgatattagcttggacgaattcataaagagc 1408

                                                                        
Query: 687  cgagtaagggatttagttcgtgatagggtaaatgaagatgagtctttaattttcaagaac 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 cgagtaagggatttagttcgtgatagggtaaatgaagatgagtctttaattttcaagaac 1348

                                                                        
Query: 747  agaggtaccacgactgctcttcttgaaggccaattattt-aagacggattcaaggattta 805
            |||||||||||||||||||||||||| |||||||||||| ||||||||||||||  ||||
Sbjct: 1347 agaggtaccacgactgctcttcttgagggccaattatttaaagacggattcaagagttta 1288

                                                                        
Query: 806  aacacgtcaaatatcgatgtggagaagcttctgagtgattcacttgacgatgcgacgacg 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 aacacgtcaaatatcgatgtggagaagcttctgagtgattcacttgacgatgcgacgacg 1228

                   
Query: 866  agacaaa 872
            |||||||
Sbjct: 1227 agacaaa 1221


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6046
Number of Sequences: 1807
Number of extensions: 6046
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)