BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE02RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig908 1405 0.0
>3x_Contig908
Length = 2758
Score = 1405 bits (709), Expect = 0.0
Identities = 799/827 (96%), Gaps = 13/827 (1%)
Strand = Plus / Minus
Query: 49 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 1087
Query: 109 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 1027
Query: 169 aaatagtggtgaaaaggtggctagttcgacaacaacacaaccatacgcccaaatatccaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aaatagtggtgaaaaggtggctagttcgacaacaacacaaccatacgcccaaatatccaa 967
Query: 229 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 907
Query: 289 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 847
Query: 349 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 787
Query: 409 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 727
Query: 469 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 667
Query: 529 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 607
Query: 589 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatt 547
Query: 649 tttgtgtgcaggaatttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 708
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttt----------atttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 497
Query: 709 tgttgggaatctattcatcattgttttgattgccactataccctctttcttatatta-ca 767
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct: 496 tgttggtaatctattcatcattgttttgattgccactataccctttttcttatagtacca 437
Query: 768 gnttttctgtttcacgtttctgat-agaatttgatccctccaa-tttctgggtactttga 825
| ||| |||| ||||||||||| ||| |||||||| || || ||||||||||| ||||
Sbjct: 436 gttttcttgttcgacgtttctgataagagtttgatccatcaaagtttctgggtacattga 377
Query: 826 ggaaatttgggtggctgaactgttcatttcgtacattggctgggcca 872
||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct: 376 ggaaatttgggtggctgaactgttcatatcgtacattgtctcggcca 330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6984
Number of Sequences: 1807
Number of extensions: 6984
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)