BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE03FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1582 0.0
>3x_Contig1590
Length = 13653
Score = 1582 bits (798), Expect = 0.0
Identities = 850/862 (98%), Gaps = 4/862 (0%)
Strand = Plus / Plus
Query: 86 cgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 cgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactgtc 3953
Query: 146 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 4013
Query: 206 ccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 ccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatggg 4073
Query: 266 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 4133
Query: 326 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 4193
Query: 386 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 4253
Query: 446 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 4313
Query: 506 catgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaactct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 catgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaactct 4373
Query: 566 acaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatggtgc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 acaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatggtgc 4433
Query: 626 gccagatgtcaccggtttacacgatttatacgagtatgttcaacagcagttaattttaag 685
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4434 gccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattttaag 4493
Query: 686 cgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaatatt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 cgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaatatt 4553
Query: 746 tagaggaagagatatagacatgttgtattctcagcttggatatctttttgagaaagttat 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 tagaggaagagatatagacatgttgtattctcagcttggatatctttttgagaaagttat 4613
Query: 806 ttgcgctaaaccaagatcttcaagagg-acatcattagaatcatttatcgtctgccttgg 864
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4614 ttgcgctaaaccaagatcttcaagaggaacatcattagaatcatttatcgtctgccttgg 4673
Query: 865 ttacaatccacca-ccaactgggatcaaaaattaga-gtaaattcttcattaaaagactt 922
||||||||||||| | |||||||| | ||||||||| |||||||||||| || |||||||
Sbjct: 4674 ttacaatccaccagcaaactgggaaccaaaattagatgtaaattcttcagtagaagactt 4733
Query: 923 ctt-caaggatgcgatttcggt 943
||| || ||||||||| |||||
Sbjct: 4734 cttccagggatgcgatatcggt 4755
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6265
Number of Sequences: 1807
Number of extensions: 6265
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)