BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 918 0.0
3x_Contig1168 323 4e-88
>3x_Contig1748
Length = 22566
Score = 918 bits (463), Expect = 0.0
Identities = 580/606 (95%), Gaps = 11/606 (1%)
Strand = Plus / Plus
Query: 326 aataatctcacaggtgctatctttatcggataaaagacaaattaagcttgacatctttac 385
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aataatct-acaggtgctatctttatcggataaaagacaaattaagcttgacatctttac 63
Query: 386 cgaggactcttcgcatatgaaatatgttgattttcttgtatctacagtaagtcatattga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cgaggactcttcgcatatgaaatatgttgattttcttgtatctacagtaagtcatattga 123
Query: 446 tgatgacttagtcttttcatcctatgtcaatttactttccgagagcattgcttacttcca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgatgacttagtcttttcatcctatgtcaatttactttccgagagcattgcttacttcca 183
Query: 506 agagtcaatcctcaagatcattttgcctttgtctgcatccatagttgactccatatctag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agagtcaatcctcaagatcattttgcctttgtctgcatccatagttgactccatatctag 243
Query: 566 actttttgaagacgagcagaaaaggggtaaaaacttgaggtctataactgctcttctagg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 actttttgaagacgagcagaaaaggggtaaaaacttgaggtctataactgctcttctagg 303
Query: 626 atctttagaagatattctagaagtgtcgcatggctatttgcaagctgatgatagcaccgg 685
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 atctttagaagaaattctagaagtgtcgcatggctatttgcaagctgatgaaagcaccgg 363
Query: 686 ttatttctctcacaccaatgncagaatatga-tttntgcagaacatggtatncaatgtgn 744
|||||||||||||||||||| |||| |||| ||| ||||||||||||||| |||||||
Sbjct: 364 ttatttctctcacaccaatgcaagaa-atgattttttgcagaacatggtatccaatgtgt 422
Query: 745 tntcatcggatcaatcctcttctg-agcacgaa-tttaaatgagagatgggtcg-tctta 801
| |||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||
Sbjct: 423 tttcatcggatcaatcctcttctgaagcacgaattttaaatgagagaatggtcgttctta 482
Query: 802 aatcttttac-atggtaagcggcagaatatcag-aatgttggatggggctgacc-aacag 858
|||||||||| |||||||||||||||||||||| ||||| | || ||||||||| |||||
Sbjct: 483 aatcttttacaatggtaagcggcagaatatcagaaatgtggaattgggctgaccaaacag 542
Query: 859 catctggagacttgaggacggtc-ataactta-aatttggccagtcattacacgaagttt 916
||||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||
Sbjct: 543 catctggagacttgaggacggtcaataactcagagtttggccagtcattacacgaagttt 602
Query: 917 cgacaa 922
||||||
Sbjct: 603 cgacaa 608
>3x_Contig1168
Length = 4574
Score = 323 bits (163), Expect = 4e-88
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 46 tcggaattcaattagtaactgaaaaattatccaaggactgggcggccgaagacgtatcgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4404 tcggaattcaattagtaactgaaaaattatccaaggactgggcggccgaagacgtatcgt 4463
Query: 106 catataaaagcttggttattgctgtgctgctaaaatttctaagtatccaaaatgacgcac 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4464 catataaaagcttggttattgctgtgctgctaaaatttctaagtatccaaaatgacgcac 4523
Query: 166 ctggcaatagcataaaaagtgcattatctcttttaagtttgct 208
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4524 ctggcaatagcataaaaagtgcattatctcttttaagtttgct 4566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5913
Number of Sequences: 1807
Number of extensions: 5913
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)