BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC34ZE04FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1574 0.0
>3x_Contig1517
Length = 8289
Score = 1574 bits (794), Expect = 0.0
Identities = 833/841 (99%), Gaps = 4/841 (0%)
Strand = Plus / Plus
Query: 86 ttcagattccatcgaaggttgaaagagaaagaattatatgtcactacgaattttgaagcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6457 ttcagattccatcgaaggttgaaagagaaagaattatatgtcactacgaattttgaagcc 6516
Query: 146 gcgatatctttcattgactcgttgacaactaaggatataataacatattgccaacacact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6517 gcgatatctttcattgactcgttgacaactaaggatataataacatattgccaacacact 6576
Query: 206 gatgaattaaaacttccgcatttggagtctatcagtgaacaagtgaaacttcctctagcg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 gatgaattaaaacttccgcatttggagtctatcagtgaacaagtgaaacttcctctagcg 6636
Query: 266 acagaggagtcatttataccggatttcaaaaggtctaactctctttctgatttaatatct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 acagaggagtcatttataccggatttcaaaaggtctaactctctttctgatttaatatct 6696
Query: 326 gttggtaatgttattgattctggttttagaaacttgatgggtcgcatcaaaacttatacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 gttggtaatgttattgattctggttttagaaacttgatgggtcgcatcaaaacttatacc 6756
Query: 386 ccgccaccgccaccaccaccaccgcatgtagcacagatacaggtaccgctaccaagcatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 ccgccaccgccaccaccaccaccgcatgtagcacagatacaggtaccgctaccaagcatc 6816
Query: 446 gaggttaccgagggtcctgctaccgattggagaaggtacaaggattataaattcgaggac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 gaggttaccgagggtcctgctaccgattggagaaggtacaaggattataaattcgaggac 6876
Query: 506 ttgaaggttagtgatatgcaaagtatatttgatatatatcgtgatttagctaataaaaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 ttgaaggttagtgatatgcaaagtatatttgatatatatcgtgatttagctaataaaaat 6936
Query: 566 aaataatgatgaggaagctaatgaattaatatataagatggtcgtaatcaatataataga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6937 aaataatgatgaggaagctaatgaattaatatataagatggtcgtaatcaatataataga 6996
Query: 626 attagtctaactgggagagtttcgacaatatatctttaactgaagatagctcctttggaa 685
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6997 attagtctaactgggagagtttcgacaatatatctttaactgaagaaagctcctttggaa 7056
Query: 686 ccaattcagtagtaactttttgtgcaagagtttggataacctgtctggtatattcaccag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7057 ccaattcagtagtaactttttgtgcaagagtttggataacctgtctggtatattcaccag 7116
Query: 746 actttgtctggtgctccaaataactgagcaatttctctttagtacgaatctctgaaggcc 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7117 actttgtctggtgctccaaataactgagcaatttctctttagtacgaatctctgaagg-c 7175
Query: 806 cttgat-aaactgttttaaggacataatcatcgttatcaccttcattccttgaactagct 864
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7176 cttgataaaactgttttaaggacataatcatcgttatcaccttcattccttgaactagct 7235
Query: 865 atggcatgaattattgggaaagaaaattntccctcggtttaga-catcagcgaatccctt 923
|||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||
Sbjct: 7236 atggcatgaattattgggaaggaaaatttcccctcgg-ttagatcatcagcgaatccctt 7294
Query: 924 c 924
|
Sbjct: 7295 c 7295
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6737
Number of Sequences: 1807
Number of extensions: 6737
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)